Variant report

Variant	rs36100499
Chromosome Location	chr22:28959118-28959119
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11912125	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11912717	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13053405	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13054496	0.91[EUR][1000 genomes]
rs13054508	0.85[EUR][1000 genomes]
rs13055501	0.91[EUR][1000 genomes]
rs13055576	0.94[EUR][1000 genomes]
rs13055649	0.88[EUR][1000 genomes]
rs13056776	1.00[EUR][1000 genomes]
rs34188840	1.00[EUR][1000 genomes]
rs34277219	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34285557	0.81[EUR][1000 genomes]
rs34780660	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34843903	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34928826	0.94[EUR][1000 genomes]
rs34929472	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34970554	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34994167	0.91[EUR][1000 genomes]
rs35230579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35286648	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35507981	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35719457	0.85[EUR][1000 genomes]
rs57062250	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58433661	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71316850	0.91[EUR][1000 genomes]
rs71325299	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71325302	0.84[AFR][1000 genomes]
rs71327305	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7286202	0.91[EUR][1000 genomes]
rs8136113	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv588880	chr22:28807277-29001789	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916473	chr22:28837041-29215603	Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28956600-28959600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr22:28956800-28959400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr22:28956800-28959400	Weak transcription	NHEK	skin
4	chr22:28956800-28967200	Weak transcription	NHDF-Ad	bronchial
5	chr22:28956800-28993200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr22:28958000-28960400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr22:28958600-28959600	Weak transcription	Hela-S3	cervix
8	chr22:28959000-28961000	Weak transcription	K562	blood

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