Variant report

Variant	rs13054496
Chromosome Location	chr22:28800401-28800402
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:28799731..28802311-chr22:28804363..28806927,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11912125	0.85[EUR][1000 genomes]
rs11912717	0.85[EUR][1000 genomes]
rs13053405	0.91[EUR][1000 genomes]
rs13054508	0.94[EUR][1000 genomes]
rs13055501	1.00[EUR][1000 genomes]
rs13055576	0.97[EUR][1000 genomes]
rs13056776	0.91[EUR][1000 genomes]
rs13057692	0.82[EUR][1000 genomes]
rs34188840	0.91[EUR][1000 genomes]
rs34277219	0.91[EUR][1000 genomes]
rs34843903	0.97[EUR][1000 genomes]
rs34928826	0.97[EUR][1000 genomes]
rs34929472	0.97[EUR][1000 genomes]
rs34970554	0.97[EUR][1000 genomes]
rs34994167	1.00[EUR][1000 genomes]
rs35230579	0.87[EUR][1000 genomes]
rs35286648	0.97[EUR][1000 genomes]
rs35507981	0.97[EUR][1000 genomes]
rs35719457	0.94[EUR][1000 genomes]
rs36100499	0.91[EUR][1000 genomes]
rs58433661	0.91[EUR][1000 genomes]
rs71316850	0.82[EUR][1000 genomes]
rs71325290	0.82[EUR][1000 genomes]
rs71325299	0.97[EUR][1000 genomes]
rs71327305	0.87[EUR][1000 genomes]
rs7286202	1.00[EUR][1000 genomes]
rs8136113	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28792600-28801800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr22:28792800-28805200	Weak transcription	Fetal Intestine Large	intestine
3	chr22:28793000-28808200	Weak transcription	Aorta	Aorta
4	chr22:28793000-28808600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr22:28793000-28814000	Weak transcription	Left Ventricle	heart
6	chr22:28793000-28819800	Weak transcription	Fetal Intestine Small	intestine
7	chr22:28793400-28806200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr22:28794200-28806000	Weak transcription	NHDF-Ad	bronchial
9	chr22:28794600-28804600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr22:28794600-28804800	Weak transcription	Fetal Stomach	stomach
11	chr22:28794600-28806000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr22:28794600-28806000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr22:28795000-28803400	Weak transcription	Brain Anterior Caudate	brain
14	chr22:28795200-28803200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr22:28796600-28802200	Weak transcription	Fetal Brain Female	brain
16	chr22:28798400-28802600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr22:28798400-28809800	Weak transcription	Fetal Lung	lung
18	chr22:28798600-28803400	Weak transcription	Brain Hippocampus Middle	brain
19	chr22:28798800-28821200	Weak transcription	Dnd41	blood
20	chr22:28799600-28804600	Weak transcription	Psoas Muscle	Psoas
21	chr22:28800200-28800800	Enhancers	Fetal Brain Male	brain

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