Variant report

Variant	rs71325299
Chromosome Location	chr22:28861486-28861487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11912125	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11912717	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13053405	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13054496	0.97[EUR][1000 genomes]
rs13054508	0.91[EUR][1000 genomes]
rs13055501	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs13055576	1.00[EUR][1000 genomes]
rs13055649	0.82[EUR][1000 genomes]
rs13056776	0.94[EUR][1000 genomes]
rs34188840	0.94[EUR][1000 genomes]
rs34277219	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34586539	0.81[EUR][1000 genomes]
rs34780660	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34843903	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34928826	1.00[EUR][1000 genomes]
rs34929472	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34970554	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34994167	0.98[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs35230579	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35286648	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35507981	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35719457	0.91[EUR][1000 genomes]
rs36100499	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57062250	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58433661	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71316850	0.85[EUR][1000 genomes]
rs71325302	0.87[AFR][1000 genomes]
rs71327305	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7286202	0.98[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs8136113	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv588880	chr22:28807277-29001789	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
5	nsv916473	chr22:28837041-29215603	Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28860000-28862600	Enhancers	Fetal Kidney	kidney
2	chr22:28860000-28863000	Enhancers	Fetal Intestine Large	intestine
3	chr22:28860000-28863400	Enhancers	Fetal Intestine Small	intestine
4	chr22:28860400-28866000	Weak transcription	Fetal Stomach	stomach
5	chr22:28860600-28862600	Enhancers	Duodenum Mucosa	Duodenum
6	chr22:28861200-28861600	Enhancers	Ovary	ovary
7	chr22:28861200-28863200	Enhancers	Fetal Brain Male	brain
8	chr22:28861400-28875800	Weak transcription	Fetal Muscle Leg	muscle

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