Variant report

Variant	rs34586539
Chromosome Location	chr22:28860504-28860505
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13053179	1.00[AFR][1000 genomes]
rs13055576	0.81[EUR][1000 genomes]
rs13056425	1.00[AFR][1000 genomes]
rs13056776	1.00[AFR][1000 genomes]
rs13058473	1.00[AFR][1000 genomes]
rs17881589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34176007	1.00[AFR][1000 genomes]
rs34285557	1.00[AFR][1000 genomes]
rs34843903	0.81[EUR][1000 genomes]
rs34928826	0.81[EUR][1000 genomes]
rs34929472	0.81[EUR][1000 genomes]
rs34970554	0.81[EUR][1000 genomes]
rs35286648	0.81[EUR][1000 genomes]
rs35507981	0.81[EUR][1000 genomes]
rs71316850	1.00[AFR][1000 genomes]
rs71325299	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv588880	chr22:28807277-29001789	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
5	nsv916473	chr22:28837041-29215603	Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28839800-28861200	Weak transcription	Ovary	ovary
2	chr22:28860000-28862600	Enhancers	Fetal Kidney	kidney
3	chr22:28860000-28863000	Enhancers	Fetal Intestine Large	intestine
4	chr22:28860000-28863400	Enhancers	Fetal Intestine Small	intestine
5	chr22:28860200-28861000	Enhancers	Fetal Lung	lung
6	chr22:28860400-28861200	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr22:28860400-28866000	Weak transcription	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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