Variant report

Variant	rs13057733
Chromosome Location	chr22:30455816-30455817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1122239	0.89[ASN][1000 genomes]
rs12233358	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12484547	0.82[ASN][1000 genomes]
rs13053765	0.85[ASN][1000 genomes]
rs13054837	0.82[ASN][1000 genomes]
rs13056332	0.82[ASN][1000 genomes]
rs13057204	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13057580	0.82[ASN][1000 genomes]
rs13057878	0.82[ASN][1000 genomes]
rs1476514	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2010916	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2012308	0.97[ASN][1000 genomes]
rs2214047	0.82[ASN][1000 genomes]
rs2412977	0.82[ASN][1000 genomes]
rs2412979	0.82[ASN][1000 genomes]
rs34474867	0.82[ASN][1000 genomes]
rs34545612	0.82[ASN][1000 genomes]
rs35710453	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs36018230	0.94[ASN][1000 genomes]
rs4820829	0.82[ASN][1000 genomes]
rs4823067	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4823071	0.85[ASN][1000 genomes]
rs5753002	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs5753007	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs5753013	0.82[ASN][1000 genomes]
rs5753014	0.82[ASN][1000 genomes]
rs5753015	0.82[ASN][1000 genomes]
rs5753019	0.82[ASN][1000 genomes]
rs5753020	0.82[ASN][1000 genomes]
rs5753022	0.82[ASN][1000 genomes]
rs5753028	0.82[ASN][1000 genomes]
rs5753029	0.82[ASN][1000 genomes]
rs5753030	0.82[ASN][1000 genomes]
rs5763734	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs5763742	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs5763746	0.97[ASN][1000 genomes]
rs5763748	0.97[ASN][1000 genomes]
rs5763749	0.97[ASN][1000 genomes]
rs5763750	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs5763758	0.85[ASN][1000 genomes]
rs5763759	0.81[AMR][1000 genomes]
rs5763763	0.85[ASN][1000 genomes]
rs5763766	0.85[ASN][1000 genomes]
rs5763769	0.85[ASN][1000 genomes]
rs5763774	0.85[ASN][1000 genomes]
rs5763782	0.85[ASN][1000 genomes]
rs5763788	0.82[ASN][1000 genomes]
rs5763805	0.82[ASN][1000 genomes]
rs5763810	0.82[ASN][1000 genomes]
rs5763852	0.82[ASN][1000 genomes]
rs5763854	0.82[ASN][1000 genomes]
rs5763861	0.82[ASN][1000 genomes]
rs718773	0.85[ASN][1000 genomes]
rs7286304	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7286681	0.85[ASN][1000 genomes]
rs739616	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs757026	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs766011	0.82[ASN][1000 genomes]
rs975704	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064081	chr22:29826745-30623965	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv544677	chr22:29826745-30623965	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv829165	chr22:30450894-30459421	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv819812	chr22:30453933-30470372	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30452600-30456200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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