Variant report

Variant	rs7286304
Chromosome Location	chr22:30473999-30474000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 109 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs1122239	0.87[ASN][1000 genomes]
rs1160671	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12233358	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12484420	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12484547	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12484983	0.89[EUR][1000 genomes]
rs13053389	0.89[EUR][1000 genomes]
rs13053765	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13054837	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13055998	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13056332	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13056990	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13057204	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13057580	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13057733	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13057878	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1476514	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16988123	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16988145	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2010916	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2012308	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2106430	0.84[EUR][1000 genomes]
rs2106722	0.82[ASN][1000 genomes]
rs2214047	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2412977	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2412979	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34391152	0.84[EUR][1000 genomes]
rs34420020	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34474867	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34545612	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35067150	1.00[EUR][1000 genomes]
rs35361418	0.84[EUR][1000 genomes]
rs35539897	0.84[EUR][1000 genomes]
rs35710453	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36018230	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3788422	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4820825	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4820829	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4823064	0.89[EUR][1000 genomes]
rs4823067	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4823071	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4823082	0.84[EUR][1000 genomes]
rs5752976	0.89[EUR][1000 genomes]
rs5752997	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5753002	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5753007	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5753013	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5753014	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5753015	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5753019	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5753020	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5753022	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5753027	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5753028	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5753029	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5753030	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5753046	0.84[EUR][1000 genomes]
rs5763561	0.89[EUR][1000 genomes]
rs5763566	0.89[EUR][1000 genomes]
rs5763569	0.89[EUR][1000 genomes]
rs5763585	0.89[EUR][1000 genomes]
rs5763601	0.89[EUR][1000 genomes]
rs5763602	0.89[EUR][1000 genomes]
rs5763604	0.89[EUR][1000 genomes]
rs5763606	0.89[EUR][1000 genomes]
rs5763609	0.89[EUR][1000 genomes]
rs5763629	0.89[EUR][1000 genomes]
rs5763637	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5763648	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5763662	0.89[EUR][1000 genomes]
rs5763681	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5763687	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5763695	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5763701	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5763734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5763742	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5763746	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5763748	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5763749	0.95[ASN][1000 genomes]
rs5763750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5763758	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5763759	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5763763	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5763766	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5763769	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5763774	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5763782	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5763787	0.83[ASN][1000 genomes]
rs5763788	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5763801	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5763805	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5763810	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5763825	0.83[ASN][1000 genomes]
rs5763852	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5763854	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5763861	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5763872	0.84[EUR][1000 genomes]
rs71331220	0.89[EUR][1000 genomes]
rs718773	0.89[ASN][1000 genomes]
rs7286681	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs739616	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs757026	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs766011	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8138404	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8142101	0.89[EUR][1000 genomes]
rs916807	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs975704	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064081	chr22:29826745-30623965	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv544677	chr22:29826745-30623965	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7286304	LGALS8	trans	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30461600-30474600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr22:30472000-30474800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr22:30473000-30474400	Enhancers	Fetal Intestine Small	intestine
4	chr22:30473000-30474400	Enhancers	HepG2	liver
5	chr22:30473000-30474600	Enhancers	GM12878-XiMat	blood
6	chr22:30473400-30474000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr22:30473400-30474000	Enhancers	Stomach Mucosa	stomach
8	chr22:30473400-30476000	Enhancers	Liver	Liver
9	chr22:30473400-30476400	Weak transcription	Fetal Lung	lung
10	chr22:30473600-30474200	Enhancers	Fetal Intestine Large	intestine
11	chr22:30473800-30475400	Enhancers	Primary T helper cells fromperipheralblood	blood

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