Variant report

Variant	rs2106722
Chromosome Location	chr22:30543824-30543825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:30539344..30542315-chr22:30542673..30545492,2	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1160671	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12233358	0.80[ASN][1000 genomes]
rs12484547	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13053765	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13054837	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13056332	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13056990	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13057204	0.80[ASN][1000 genomes]
rs13057580	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13057878	0.95[ASN][1000 genomes]
rs2012308	0.80[ASN][1000 genomes]
rs2214047	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2412977	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2412979	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs34391152	0.83[ASN][1000 genomes]
rs34420020	0.89[ASN][1000 genomes]
rs34474867	0.95[ASN][1000 genomes]
rs34545612	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs35067150	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs35539897	0.83[ASN][1000 genomes]
rs35710453	0.83[ASN][1000 genomes]
rs36018230	0.83[ASN][1000 genomes]
rs4820829	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4823067	0.80[ASN][1000 genomes]
rs4823071	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs5753002	0.80[ASN][1000 genomes]
rs5753007	0.82[ASN][1000 genomes]
rs5753013	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs5753014	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs5753015	0.95[ASN][1000 genomes]
rs5753019	0.95[ASN][1000 genomes]
rs5753020	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs5753022	0.95[ASN][1000 genomes]
rs5753027	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs5753028	0.95[ASN][1000 genomes]
rs5753029	0.95[ASN][1000 genomes]
rs5753030	0.95[ASN][1000 genomes]
rs5763742	0.80[ASN][1000 genomes]
rs5763746	0.80[ASN][1000 genomes]
rs5763748	0.80[ASN][1000 genomes]
rs5763749	0.80[ASN][1000 genomes]
rs5763750	0.83[ASN][1000 genomes]
rs5763758	0.92[ASN][1000 genomes]
rs5763759	0.86[ASN][1000 genomes]
rs5763763	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs5763766	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs5763769	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs5763774	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs5763782	0.92[ASN][1000 genomes]
rs5763787	0.92[ASN][1000 genomes]
rs5763788	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs5763801	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs5763805	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs5763810	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs5763825	0.98[ASN][1000 genomes]
rs5763852	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs5763854	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs5763861	0.95[ASN][1000 genomes]
rs5763872	0.83[ASN][1000 genomes]
rs6006393	0.83[ASN][1000 genomes]
rs718773	0.92[ASN][1000 genomes]
rs7286304	0.82[ASN][1000 genomes]
rs7286681	0.92[ASN][1000 genomes]
rs7288576	0.81[ASN][1000 genomes]
rs739616	0.83[ASN][1000 genomes]
rs757026	0.82[ASN][1000 genomes]
rs766011	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs975704	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064081	chr22:29826745-30623965	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv544677	chr22:29826745-30623965	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv588884	chr22:30494371-30590026	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv834173	chr22:30515092-30658277	Enhancers ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv527188	chr22:30529741-30581722	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv966100	chr22:30530653-30547684	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2106722	LGALS8	trans	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30541000-30555200	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links