Variant report

Variant	rs739616
Chromosome Location	chr22:30470925-30470926
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs1122239	0.89[ASN][1000 genomes]
rs1160671	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12233358	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12483946	0.92[CHB][hapmap]
rs12484420	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12484547	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12484740	1.00[CEU][hapmap]
rs12484983	0.81[CHB][hapmap];0.89[EUR][1000 genomes]
rs13053389	0.89[EUR][1000 genomes]
rs13053765	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13054837	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13055998	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13056332	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13056990	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13057204	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13057580	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13057733	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13057878	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1476514	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16988123	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16988145	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2010916	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2012308	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2106430	0.84[EUR][1000 genomes]
rs2106722	0.83[ASN][1000 genomes]
rs2214047	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2412961	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs2412977	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2412979	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34391152	0.84[EUR][1000 genomes]
rs34420020	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34474867	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34545612	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35067150	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35361418	0.84[EUR][1000 genomes]
rs35539897	0.84[EUR][1000 genomes]
rs35710453	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36018230	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3788422	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4820825	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4820829	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4823064	0.89[EUR][1000 genomes]
rs4823067	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4823071	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4823080	1.00[CEU][hapmap];0.93[CHB][hapmap]
rs4823082	0.84[EUR][1000 genomes]
rs5752976	0.89[EUR][1000 genomes]
rs5752997	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5753002	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5753007	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5753013	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5753014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5753015	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5753019	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5753020	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5753022	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5753027	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs5753028	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5753029	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5753030	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5753046	0.84[EUR][1000 genomes]
rs5763556	0.89[EUR][1000 genomes]
rs5763557	0.89[EUR][1000 genomes]
rs5763561	0.89[EUR][1000 genomes]
rs5763566	0.89[EUR][1000 genomes]
rs5763569	0.89[EUR][1000 genomes]
rs5763585	0.89[EUR][1000 genomes]
rs5763601	0.89[EUR][1000 genomes]
rs5763602	0.89[EUR][1000 genomes]
rs5763604	0.89[EUR][1000 genomes]
rs5763606	0.89[EUR][1000 genomes]
rs5763609	0.89[EUR][1000 genomes]
rs5763629	0.89[EUR][1000 genomes]
rs5763637	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5763648	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5763662	0.89[EUR][1000 genomes]
rs5763681	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5763687	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5763695	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5763701	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5763734	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5763742	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5763746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5763748	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5763749	0.97[ASN][1000 genomes]
rs5763750	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5763758	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5763759	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs5763763	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5763766	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5763769	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5763774	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5763782	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5763787	0.85[ASN][1000 genomes]
rs5763788	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5763801	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs5763805	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5763810	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5763825	0.85[ASN][1000 genomes]
rs5763852	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5763854	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5763861	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5763872	1.00[CEU][hapmap];0.93[CHB][hapmap];0.84[EUR][1000 genomes]
rs6006393	0.92[CHB][hapmap]
rs71331220	0.89[EUR][1000 genomes]
rs718773	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7286304	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7286681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs757026	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs766011	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8138404	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8142101	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[EUR][1000 genomes]
rs916807	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs975704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064081	chr22:29826745-30623965	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv544677	chr22:29826745-30623965	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs739616	LGALS8	trans	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30461600-30474600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr22:30470800-30471800	Enhancers	GM12878-XiMat	blood

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