Variant report
| Variant | rs13060621 |
|---|---|
| Chromosome Location | chr3:88725147-88725148 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10446361 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13063905 | 0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs13067884 | 0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs13068692 | 0.92[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs13073423 | 0.92[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs13074030 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs13075366 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs13081387 | 0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs13082178 | 0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs13082894 | 0.92[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs13083673 | 0.92[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs13085293 | 0.92[AMR][1000 genomes] |
| rs13088227 | 0.85[AMR][1000 genomes] |
| rs13089927 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs13090780 | 0.85[AMR][1000 genomes] |
| rs13090965 | 0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs13100049 | 0.92[AMR][1000 genomes] |
| rs13100970 | 0.92[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs17025980 | 0.85[AMR][1000 genomes] |
| rs35129035 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs36031826 | 0.85[AMR][1000 genomes] |
| rs71628821 | 0.85[AMR][1000 genomes] |
| rs955291 | 0.85[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs9820989 | 0.92[AMR][1000 genomes];0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916330 | chr3:88083580-88884125 | Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv1014703 | chr3:88623532-88733631 | Enhancers Weak transcription ZNF genes & repeats Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv877156 | chr3:88690163-88803526 | Weak transcription Enhancers ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv877157 | chr3:88690163-88974863 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv1009261 | chr3:88700735-88754260 | Weak transcription Enhancers Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv536636 | chr3:88700735-88754260 | Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:88720200-88725400 | Weak transcription | Fetal Intestine Large | intestine |
