Variant report
| Variant | rs13073423 |
|---|---|
| Chromosome Location | chr3:88714434-88714435 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10446361 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs13060621 | 0.92[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs13063234 | 0.90[ASN][1000 genomes] |
| rs13063905 | 1.00[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs13067884 | 1.00[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs13068692 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs13074030 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs13075366 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs13081387 | 1.00[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs13082178 | 1.00[AMR][1000 genomes] |
| rs13082894 | 1.00[AMR][1000 genomes] |
| rs13083673 | 1.00[AMR][1000 genomes] |
| rs13085293 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs13088227 | 0.92[AMR][1000 genomes] |
| rs13089927 | 0.96[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs13090780 | 0.92[AMR][1000 genomes] |
| rs13090965 | 1.00[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs13100049 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs13100970 | 1.00[AMR][1000 genomes] |
| rs17025980 | 0.92[AMR][1000 genomes] |
| rs35129035 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs36031826 | 0.92[AMR][1000 genomes] |
| rs71628821 | 0.92[AMR][1000 genomes] |
| rs955291 | 0.92[AMR][1000 genomes] |
| rs9820989 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916330 | chr3:88083580-88884125 | Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv1014703 | chr3:88623532-88733631 | Enhancers Weak transcription ZNF genes & repeats Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv877156 | chr3:88690163-88803526 | Weak transcription Enhancers ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv877157 | chr3:88690163-88974863 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv1009261 | chr3:88700735-88754260 | Weak transcription Enhancers Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv536636 | chr3:88700735-88754260 | Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 7 | nsv965408 | chr3:88700788-88716041 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:88713800-88717200 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
