Variant report

Variant	rs955291
Chromosome Location	chr3:88637911-88637912
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:88637113..88639564-chr3:88641167..88643213,2	MCF-7	breast:
2	chr3:88630638..88632536-chr3:88637327..88639370,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10446361	0.92[AMR][1000 genomes]
rs13060621	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs13063905	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13067884	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13068692	0.92[AMR][1000 genomes]
rs13073423	0.92[AMR][1000 genomes]
rs13074030	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13075366	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13081387	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13082178	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13082894	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13083673	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13085293	0.92[AMR][1000 genomes]
rs13088227	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13089927	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13090780	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13090965	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13100049	0.92[AMR][1000 genomes]
rs13100970	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17025980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35129035	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs36031826	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6551352	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6768591	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs71628821	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9820989	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv3906	chr3:88609226-88654550	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1014703	chr3:88623532-88733631	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88637400-88638600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:88637800-88638000	Enhancers	Brain Germinal Matrix	brain
3	chr3:88637800-88640000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr3:88637800-88640000	Enhancers	HUES64 Cell Line	embryonic stem cell

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