Variant report

Variant	rs13062095
Chromosome Location	chr3:101267385-101267386
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1019677	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12496260	0.80[EUR][1000 genomes]
rs13088318	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13322987	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16843927	0.94[ASN][1000 genomes]
rs1918405	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28460520	0.85[ASN][1000 genomes]
rs4287896	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62280667	0.88[EUR][1000 genomes]
rs6772703	0.94[ASN][1000 genomes]
rs7628681	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7631506	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9814991	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9859077	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13062095	SENP7	Cis_1M	lymphoblastoid	RTeQTL
rs13062095	SENP7	cis	Nerve Tibial	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101261600-101267400	Weak transcription	K562	blood
2	chr3:101263600-101267600	Weak transcription	Primary T cells from cord blood	blood
3	chr3:101263600-101268000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr3:101263800-101267600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:101263800-101267800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr3:101263800-101267800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr3:101266600-101267800	Enhancers	HepG2	liver
8	chr3:101267200-101268400	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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