Variant report

Variant	rs13088318
Chromosome Location	chr3:101242751-101242752
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:101236234..101238380-chr3:101241141..101243179,2	K562	blood:
2	chr3:101228925..101232946-chr3:101241178..101244618,3	K562	blood:
3	chr3:101241908..101244826-chr3:101250601..101253357,3	K562	blood:

Variant related genes	Relation type
ENSG00000138468	Chromatin interaction
ENSG00000175841	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1019677	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10936664	0.84[EUR][1000 genomes]
rs12496260	0.85[EUR][1000 genomes]
rs13062095	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13320918	0.81[EUR][1000 genomes]
rs13322987	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16843927	0.85[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1918405	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2141179	0.84[EUR][1000 genomes]
rs2141180	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs2162304	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs2178036	0.81[EUR][1000 genomes]
rs2317749	0.87[CEU][hapmap]
rs2433031	0.85[CEU][hapmap]
rs2553416	0.85[CEU][hapmap]
rs2553427	0.91[CEU][hapmap]
rs2553430	0.85[CEU][hapmap]
rs2682386	0.91[CEU][hapmap]
rs28460520	0.82[ASN][1000 genomes]
rs34255148	0.83[EUR][1000 genomes]
rs3846091	0.84[EUR][1000 genomes]
rs4287896	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4683900	0.91[CEU][hapmap]
rs4683917	0.81[EUR][1000 genomes]
rs4683918	0.81[EUR][1000 genomes]
rs473702	0.91[CEU][hapmap]
rs497953	0.91[CEU][hapmap]
rs62280667	0.93[EUR][1000 genomes]
rs6441608	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs6441610	0.84[EUR][1000 genomes]
rs6771561	0.83[EUR][1000 genomes]
rs6772703	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7628681	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7631506	0.91[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814991	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9843186	0.81[EUR][1000 genomes]
rs9856435	0.84[EUR][1000 genomes]
rs9859077	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13088318	SENP7	Cis_1M	lymphoblastoid	RTeQTL
rs13088318	SENP7	cis	Nerve Tibial	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101239000-101244600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:101239200-101252000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:101240400-101243400	Weak transcription	K562	blood
4	chr3:101240600-101251000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:101241800-101247600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr3:101242200-101247400	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr3:101242200-101248000	Weak transcription	Primary T cells from cord blood	blood

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