Variant report

Variant	rs4683917
Chromosome Location	chr3:101186025-101186026
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1019677	0.91[EUR][1000 genomes]
rs10936607	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10936642	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10936664	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12491955	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12496260	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13087404	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13088318	0.81[EUR][1000 genomes]
rs13320918	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13322987	0.96[EUR][1000 genomes]
rs16843927	0.97[EUR][1000 genomes]
rs1918405	0.91[EUR][1000 genomes]
rs2141179	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2141180	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2178036	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2250611	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2317699	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2317700	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2317745	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2317749	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2317751	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2433031	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2553416	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2553424	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2553427	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2553430	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2682383	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2682384	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2682386	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2682390	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2682391	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28460520	0.83[EUR][1000 genomes]
rs28565548	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34255148	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3846091	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4287896	0.91[EUR][1000 genomes]
rs4683899	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4683900	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4683918	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs473702	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs497953	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs503734	0.82[ASN][1000 genomes]
rs508537	0.82[EUR][1000 genomes]
rs520558	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs551442	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56075912	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62280667	0.91[ASN][1000 genomes]
rs6441602	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6441608	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6441610	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6771561	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6772703	0.95[EUR][1000 genomes]
rs6773536	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7628681	0.91[EUR][1000 genomes]
rs7631506	0.96[EUR][1000 genomes]
rs7636475	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9814991	0.92[EUR][1000 genomes]
rs9843186	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9856435	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9859077	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9874188	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4683917	SENP7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101160200-101210800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:101161400-101196800	Weak transcription	Thymus	Thymus
3	chr3:101161400-101207600	Weak transcription	Aorta	Aorta
4	chr3:101171200-101230400	Weak transcription	Brain Substantia Nigra	brain
5	chr3:101171400-101193400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:101171400-101207800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:101174000-101202000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:101174600-101211000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr3:101176000-101211200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:101176600-101211600	Weak transcription	HSMM	muscle
11	chr3:101176800-101193400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr3:101176800-101203200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:101176800-101211200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr3:101176800-101211400	Weak transcription	Colon Smooth Muscle	Colon
15	chr3:101177600-101191600	Weak transcription	Primary B cells from cord blood	blood
16	chr3:101177600-101194200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr3:101177600-101210800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr3:101177800-101193200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:101177800-101194200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr3:101177800-101202000	Weak transcription	Dnd41	blood
21	chr3:101177800-101202800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr3:101178000-101192200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr3:101178200-101193400	Weak transcription	Fetal Lung	lung
24	chr3:101178200-101207000	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr3:101181000-101193400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr3:101183800-101186400	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr3:101184000-101186400	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr3:101184200-101197000	Weak transcription	Small Intestine	intestine
29	chr3:101184400-101191600	Weak transcription	Fetal Brain Male	brain
30	chr3:101184400-101203200	Weak transcription	Ovary	ovary
31	chr3:101185000-101186800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr3:101185000-101187000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr3:101185200-101186200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr3:101185200-101186200	Flanking Active TSS	Primary T cells from cord blood	blood
35	chr3:101185400-101186200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr3:101185400-101186200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr3:101185400-101186200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr3:101185400-101186200	Active TSS	iPS-20b Cell Line	embryonic stem cell
39	chr3:101185400-101186200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
40	chr3:101185400-101186200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr3:101185400-101186400	Active TSS	iPS-18 Cell Line	embryonic stem cell
42	chr3:101185600-101186200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
43	chr3:101185600-101186200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr3:101185600-101186200	Active TSS	HUES48 Cell Line	embryonic stem cell
45	chr3:101185600-101186200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
46	chr3:101185600-101186200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr3:101185600-101186200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr3:101185600-101186200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
49	chr3:101185600-101186200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
50	chr3:101185600-101186200	Active TSS	Colonic Mucosa	Colon

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