Variant report
| Variant | rs28460520 |
|---|---|
| Chromosome Location | chr3:101270494-101270495 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs1019677 | 0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10936607 | 0.81[EUR][1000 genomes] |
| rs10936664 | 0.85[EUR][1000 genomes] |
| rs12496260 | 0.84[EUR][1000 genomes] |
| rs13062095 | 0.85[ASN][1000 genomes] |
| rs13087404 | 0.81[EUR][1000 genomes] |
| rs13088318 | 0.82[ASN][1000 genomes] |
| rs13320918 | 0.82[EUR][1000 genomes] |
| rs13322987 | 0.85[EUR][1000 genomes] |
| rs16843927 | 0.85[EUR][1000 genomes] |
| rs1918405 | 0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2141179 | 0.85[EUR][1000 genomes] |
| rs2141180 | 0.83[EUR][1000 genomes] |
| rs2178036 | 0.81[EUR][1000 genomes] |
| rs2250611 | 0.81[EUR][1000 genomes] |
| rs2317699 | 0.81[EUR][1000 genomes] |
| rs2317700 | 0.80[EUR][1000 genomes] |
| rs2317745 | 0.80[EUR][1000 genomes] |
| rs2553427 | 0.81[EUR][1000 genomes] |
| rs2682383 | 0.80[EUR][1000 genomes] |
| rs2682391 | 0.81[EUR][1000 genomes] |
| rs34255148 | 0.83[EUR][1000 genomes] |
| rs3846091 | 0.85[EUR][1000 genomes] |
| rs4287896 | 0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4683899 | 0.81[EUR][1000 genomes] |
| rs4683900 | 0.80[EUR][1000 genomes] |
| rs4683917 | 0.83[EUR][1000 genomes] |
| rs4683918 | 0.82[EUR][1000 genomes] |
| rs56075912 | 0.81[EUR][1000 genomes] |
| rs6441608 | 0.83[EUR][1000 genomes] |
| rs6441610 | 0.85[EUR][1000 genomes] |
| rs6771561 | 0.84[EUR][1000 genomes] |
| rs6772703 | 0.84[EUR][1000 genomes] |
| rs6773536 | 0.81[EUR][1000 genomes] |
| rs7628681 | 0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7631506 | 0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7636475 | 0.81[EUR][1000 genomes] |
| rs9814991 | 0.87[EUR][1000 genomes] |
| rs9843186 | 0.82[EUR][1000 genomes] |
| rs9856435 | 0.84[EUR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:101268400-101275400 | Weak transcription | K562 | blood |
| 2 | chr3:101268600-101271600 | Weak transcription | HepG2 | liver |
