Variant report

Variant	rs13062841
Chromosome Location	chr3:21684498-21684499
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11717240	0.94[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11719160	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12152385	0.97[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13064180	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13071128	0.84[ASN][1000 genomes]
rs13074623	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13094966	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1996629	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2335810	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3849547	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3907432	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3936574	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56910054	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6781797	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6795488	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6797535	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71310271	0.84[ASN][1000 genomes]
rs73037276	0.82[AMR][1000 genomes]
rs9832593	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv834631	chr3:21612283-21763887	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1007048	chr3:21666807-21865229	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv536516	chr3:21666807-21865229	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21651600-21686600	Weak transcription	Fetal Stomach	stomach
2	chr3:21665000-21685200	Weak transcription	Aorta	Aorta
3	chr3:21682600-21686400	Weak transcription	Fetal Lung	lung
4	chr3:21682800-21686800	Weak transcription	Psoas Muscle	Psoas
5	chr3:21683600-21686600	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:21683800-21686400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:21683800-21686600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:21683800-21686600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:21683800-21706600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:21684000-21684600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr3:21684000-21686800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:21684200-21686200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr3:21684200-21687000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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