Variant report

Variant	rs71310271
Chromosome Location	chr3:21705380-21705381
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:21705075..21707006-chr3:21711502..21714008,3	K562	blood:
2	chr3:21700043..21701909-chr3:21703783..21705920,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11717240	0.89[ASN][1000 genomes]
rs12152385	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12630615	0.82[EUR][1000 genomes]
rs13062841	0.84[ASN][1000 genomes]
rs13064180	0.83[ASN][1000 genomes]
rs13094966	0.91[ASN][1000 genomes]
rs1996629	0.84[ASN][1000 genomes]
rs2335810	0.84[ASN][1000 genomes]
rs3849547	0.83[ASN][1000 genomes]
rs3907432	0.83[ASN][1000 genomes]
rs3936574	0.83[ASN][1000 genomes]
rs56910054	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6781797	0.83[ASN][1000 genomes]
rs6795488	0.84[ASN][1000 genomes]
rs6797535	0.84[ASN][1000 genomes]
rs73037276	0.84[EUR][1000 genomes]
rs7620093	0.82[EUR][1000 genomes]
rs7625976	0.82[EUR][1000 genomes]
rs9820426	0.82[EUR][1000 genomes]
rs9825989	0.82[EUR][1000 genomes]
rs9832593	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv834631	chr3:21612283-21763887	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1007048	chr3:21666807-21865229	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv536516	chr3:21666807-21865229	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv589896	chr3:21692393-21712269	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21683800-21706600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:21685600-21707200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:21687200-21706200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:21687200-21709600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:21687400-21706800	Weak transcription	Fetal Lung	lung
6	chr3:21688000-21707000	Weak transcription	Fetal Muscle Leg	muscle
7	chr3:21696600-21713400	Weak transcription	Fetal Heart	heart
8	chr3:21696800-21713200	Weak transcription	NHDF-Ad	bronchial
9	chr3:21697200-21706200	Weak transcription	Aorta	Aorta
10	chr3:21699000-21707000	Weak transcription	Fetal Stomach	stomach
11	chr3:21702400-21706400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:21702600-21706800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:21703800-21709600	Weak transcription	Left Ventricle	heart
14	chr3:21704000-21705800	Weak transcription	K562	blood
15	chr3:21705200-21706800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:21705200-21710000	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr3:21705200-21713800	Weak transcription	Psoas Muscle	Psoas

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