Variant report

Variant	rs9820426
Chromosome Location	chr3:21719184-21719185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:21709988..21712111-chr3:21717387..21720312,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11706806	0.95[ASN][1000 genomes]
rs11709774	0.85[EUR][1000 genomes]
rs11717240	0.80[AMR][1000 genomes]
rs12152385	0.83[AMR][1000 genomes]
rs12630615	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12632528	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13074623	0.83[AMR][1000 genomes]
rs13094966	0.80[AMR][1000 genomes]
rs3907432	0.83[AMR][1000 genomes]
rs3936574	0.80[AMR][1000 genomes]
rs56910054	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67127938	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71310271	0.82[EUR][1000 genomes]
rs73037276	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7620093	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7621873	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7623230	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7625976	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9816269	0.92[AFR][1000 genomes]
rs9825989	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv834631	chr3:21612283-21763887	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1007048	chr3:21666807-21865229	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv536516	chr3:21666807-21865229	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv527771	chr3:21716235-21726363	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21707400-21719600	Weak transcription	Fetal Lung	lung
2	chr3:21707800-21719800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr3:21708200-21719800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:21710000-21719600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:21710000-21724400	Weak transcription	Left Ventricle	heart
6	chr3:21711200-21719600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:21714200-21719600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:21715000-21728600	Weak transcription	Psoas Muscle	Psoas
9	chr3:21718600-21719200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:21718600-21719600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr3:21718800-21719800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr3:21718800-21720000	Weak transcription	Aorta	Aorta
13	chr3:21718800-21723400	Weak transcription	Fetal Stomach	stomach
14	chr3:21719000-21720000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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