Variant report

Variant	rs13062864
Chromosome Location	chr3:133779871-133779872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr3:133779622-133780046	HepG2	liver:	n/a	n/a
2	FOXA1	chr3:133779631-133779938	HepG2	liver:	n/a	n/a
3	NR2F2	chr3:133779494-133780187	MCF-7	breast:	n/a	chr3:133779788-133779803
4	FOXA2	chr3:133779661-133779962	HepG2	liver:	n/a	n/a
5	FOXA1	chr3:133779624-133780018	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000243832	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13058950	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13096547	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34254603	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4274739	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621667	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133773200-133780200	Enhancers	Placenta	Placenta
2	chr3:133773400-133780400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:133774400-133780200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:133775200-133780400	Enhancers	Fetal Intestine Small	intestine
5	chr3:133775400-133780200	Enhancers	Gastric	stomach
6	chr3:133775400-133780400	Enhancers	Fetal Intestine Large	intestine
7	chr3:133775400-133780600	Enhancers	Pancreas	Pancrea
8	chr3:133775600-133780600	Enhancers	Spleen	Spleen
9	chr3:133776400-133780200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr3:133776600-133780400	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr3:133776600-133780400	Enhancers	Stomach Mucosa	stomach
12	chr3:133776800-133785200	Weak transcription	Esophagus	oesophagus
13	chr3:133777000-133780200	Enhancers	Duodenum Mucosa	Duodenum
14	chr3:133778000-133780200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:133778000-133780400	Enhancers	Right Atrium	heart
16	chr3:133778200-133780000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:133778200-133780200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr3:133778200-133780200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:133778200-133780200	Enhancers	Osteobl	bone
20	chr3:133778200-133780400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:133778200-133780600	Enhancers	Fetal Muscle Leg	muscle
22	chr3:133778400-133780200	Enhancers	Fetal Muscle Trunk	muscle
23	chr3:133778600-133780000	Enhancers	Liver	Liver
24	chr3:133778600-133780200	Enhancers	Muscle Satellite Cultured Cells	--
25	chr3:133778600-133780600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr3:133778600-133780600	Enhancers	Ovary	ovary
27	chr3:133778800-133780400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:133778800-133780600	Enhancers	Right Ventricle	heart
29	chr3:133779000-133780000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:133779000-133780000	Enhancers	Fetal Lung	lung
31	chr3:133779000-133780400	Enhancers	Adipose Nuclei	Adipose
32	chr3:133779200-133780000	Enhancers	Hela-S3	cervix
33	chr3:133779200-133780400	Enhancers	Left Ventricle	heart
34	chr3:133779400-133780200	Enhancers	Psoas Muscle	Psoas
35	chr3:133779400-133780200	Flanking Active TSS	HepG2	liver
36	chr3:133779600-133780000	Weak transcription	Lung	lung
37	chr3:133779600-133780200	Enhancers	HUVEC	blood vessel
38	chr3:133779600-133785800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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