Variant report

Variant	rs7621667
Chromosome Location	chr3:133786840-133786841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RYK-2	chr3:133786551-133787014	NONHSAT092226

rs_ID	r²[population]
rs11716235	1.00[CHB][hapmap]
rs11720811	1.00[CHB][hapmap]
rs13058950	1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062864	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13074733	1.00[CHB][hapmap]
rs13096547	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34254603	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4241361	1.00[CHB][hapmap]
rs4241362	1.00[CHB][hapmap]
rs4274739	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4339087	1.00[CHB][hapmap]
rs4634113	1.00[CHB][hapmap]
rs6804798	1.00[CHB][hapmap]
rs7634038	1.00[CHB][hapmap]
rs7639796	1.00[CHB][hapmap]
rs9828294	1.00[CHB][hapmap]
rs9840711	1.00[CHB][hapmap]
rs9874493	1.00[CHB][hapmap]
rs9881514	1.00[CHB][hapmap]
rs9882333	1.00[CHB][hapmap]

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133780000-133789200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:133780600-133789200	Weak transcription	Ovary	ovary
3	chr3:133783800-133787600	Enhancers	Spleen	Spleen
4	chr3:133784000-133787600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr3:133784200-133787000	Enhancers	Fetal Intestine Large	intestine
6	chr3:133784200-133787000	Enhancers	HUVEC	blood vessel
7	chr3:133784200-133787200	Enhancers	Fetal Intestine Small	intestine
8	chr3:133784400-133787000	Enhancers	Right Atrium	heart
9	chr3:133784400-133787200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:133784800-133787800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:133785200-133787200	Enhancers	Placenta	Placenta
12	chr3:133785400-133787800	Enhancers	Fetal Muscle Trunk	muscle
13	chr3:133785400-133789800	Weak transcription	HSMMtube	muscle
14	chr3:133785600-133789600	Weak transcription	Fetal Lung	lung
15	chr3:133785600-133789800	Weak transcription	Lung	lung
16	chr3:133785800-133789600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:133785800-133790000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr3:133786000-133789800	Weak transcription	Osteobl	bone
19	chr3:133786200-133789200	Weak transcription	Fetal Muscle Leg	muscle
20	chr3:133786400-133787200	Weak transcription	Esophagus	oesophagus
21	chr3:133786400-133789600	Weak transcription	Stomach Mucosa	stomach
22	chr3:133786400-133789800	Weak transcription	Right Ventricle	heart
23	chr3:133786600-133787600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr3:133786600-133792800	Weak transcription	Left Ventricle	heart
25	chr3:133786800-133787000	Enhancers	Adipose Nuclei	Adipose
26	chr3:133786800-133789600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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