Variant report

Variant	rs9840711
Chromosome Location	chr3:133690825-133690826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133689098..133691983-chr3:133695476..133697477,2	K562	blood:
2	chr3:133688128..133691070-chr3:133695886..133697477,3	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11716235	1.00[CHB][hapmap]
rs11719536	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11720811	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11720843	0.85[TSI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13058950	1.00[CHB][hapmap]
rs13074733	1.00[CHB][hapmap]
rs13083496	0.90[EUR][1000 genomes]
rs28547582	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34087836	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34603519	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34856813	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35473313	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35843040	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35911303	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs36011147	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4075873	0.87[EUR][1000 genomes]
rs4241361	1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[EUR][1000 genomes]
rs4241362	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4331673	0.82[TSI][hapmap];0.81[AMR][1000 genomes]
rs4634113	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4643708	0.91[EUR][1000 genomes]
rs62269155	0.90[EUR][1000 genomes]
rs6804798	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes]
rs7634038	1.00[CHB][hapmap]
rs7639796	1.00[CHB][hapmap]
rs9828294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9842346	0.84[AMR][1000 genomes]
rs9842594	0.85[AMR][1000 genomes]
rs9852999	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9855403	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9857498	0.80[AMR][1000 genomes]
rs9874493	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];0.84[TSI][hapmap];0.88[EUR][1000 genomes]
rs9881514	1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9882333	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];0.96[TSI][hapmap];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527655	chr3:133687864-133696285	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9840711	A4GNT	cis	cerebellum	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133663800-133694800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:133664000-133705400	Weak transcription	Fetal Intestine Small	intestine
3	chr3:133664800-133713000	Weak transcription	Gastric	stomach
4	chr3:133675400-133698800	Weak transcription	Right Ventricle	heart
5	chr3:133682800-133699000	Weak transcription	Stomach Mucosa	stomach
6	chr3:133687600-133696600	Weak transcription	Left Ventricle	heart
7	chr3:133687600-133697200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:133688000-133710800	Weak transcription	Fetal Lung	lung
9	chr3:133688200-133692000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:133689600-133691800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr3:133689800-133695600	Weak transcription	Spleen	Spleen
12	chr3:133690000-133692200	Weak transcription	Esophagus	oesophagus
13	chr3:133690200-133691800	Weak transcription	Adipose Nuclei	Adipose
14	chr3:133690200-133692200	Weak transcription	Lung	lung
15	chr3:133690200-133692200	Weak transcription	Right Atrium	heart
16	chr3:133690200-133697200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:133690600-133691600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr3:133690600-133693000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr3:133690800-133692000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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