Variant report

Variant	rs34603519
Chromosome Location	chr3:133681374-133681375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133669646..133671768-chr3:133681028..133683315,2	MCF-7	breast:
2	chr3:133679126..133681461-chr3:133682913..133685709,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11720811	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13083496	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28547582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34087836	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34856813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35473313	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35843040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35911303	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36011147	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4075873	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4241361	0.94[EUR][1000 genomes]
rs4241362	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4634113	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4643708	0.98[EUR][1000 genomes]
rs56078520	0.83[EUR][1000 genomes]
rs62269155	0.97[EUR][1000 genomes]
rs6804798	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9828294	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9840711	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9855403	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9874493	0.95[EUR][1000 genomes]
rs9881514	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9882333	0.92[EUR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133663800-133694800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:133664000-133705400	Weak transcription	Fetal Intestine Small	intestine
3	chr3:133664800-133713000	Weak transcription	Gastric	stomach
4	chr3:133668400-133685600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:133670600-133687000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:133672600-133681400	Weak transcription	Esophagus	oesophagus
7	chr3:133674000-133681400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr3:133675400-133682200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:133675400-133698800	Weak transcription	Right Ventricle	heart
10	chr3:133676200-133683800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:133676400-133685200	Weak transcription	Right Atrium	heart
12	chr3:133677000-133681400	Weak transcription	HUVEC	blood vessel
13	chr3:133677400-133681400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr3:133677400-133682200	Weak transcription	Lung	lung
15	chr3:133677600-133682000	Weak transcription	Psoas Muscle	Psoas
16	chr3:133677800-133683400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr3:133678000-133681400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr3:133678000-133681600	Weak transcription	HSMM	muscle
19	chr3:133678000-133682000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr3:133678000-133683400	Weak transcription	Fetal Thymus	thymus
21	chr3:133678400-133681400	Weak transcription	Spleen	Spleen
22	chr3:133680200-133681400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr3:133680200-133682600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr3:133680800-133684400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:133681000-133681800	Weak transcription	Fetal Muscle Leg	muscle
26	chr3:133681200-133682800	Enhancers	Stomach Mucosa	stomach
27	chr3:133681200-133684000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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