Variant report

Variant	rs4634113
Chromosome Location	chr3:133692497-133692498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133687273..133690612-chr3:133691267..133693178,3	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11716235	1.00[CHB][hapmap]
rs11719536	0.82[EUR][1000 genomes]
rs11720811	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs11720843	0.82[EUR][1000 genomes]
rs13058950	1.00[CHB][hapmap]
rs13074733	1.00[CHB][hapmap]
rs13083496	0.91[EUR][1000 genomes]
rs28547582	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34087836	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34603519	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34856813	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35473313	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35843040	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35911303	0.92[EUR][1000 genomes]
rs36011147	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4075873	0.88[EUR][1000 genomes]
rs4241361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4241362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4331673	0.80[EUR][1000 genomes]
rs4643708	0.92[EUR][1000 genomes]
rs62269155	0.91[EUR][1000 genomes]
rs6804798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs7634038	1.00[CHB][hapmap]
rs7639796	1.00[CHB][hapmap]
rs9828294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9840711	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9842346	0.80[EUR][1000 genomes]
rs9852999	0.81[EUR][1000 genomes]
rs9855403	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9874493	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs9881514	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9882333	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527655	chr3:133687864-133696285	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133663800-133694800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:133664000-133705400	Weak transcription	Fetal Intestine Small	intestine
3	chr3:133664800-133713000	Weak transcription	Gastric	stomach
4	chr3:133675400-133698800	Weak transcription	Right Ventricle	heart
5	chr3:133682800-133699000	Weak transcription	Stomach Mucosa	stomach
6	chr3:133687600-133696600	Weak transcription	Left Ventricle	heart
7	chr3:133687600-133697200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:133688000-133710800	Weak transcription	Fetal Lung	lung
9	chr3:133689800-133695600	Weak transcription	Spleen	Spleen
10	chr3:133690200-133697200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:133690600-133693000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:133691400-133693200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:133691600-133695600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr3:133691800-133692600	Enhancers	Adipose Nuclei	Adipose
15	chr3:133691800-133692800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
16	chr3:133692000-133692800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:133692000-133693400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:133692200-133692600	ZNF genes & repeats	Esophagus	oesophagus
19	chr3:133692200-133692600	Enhancers	Right Atrium	heart
20	chr3:133692200-133692600	Enhancers	NHDF-Ad	bronchial
21	chr3:133692200-133692800	ZNF genes & repeats	Fetal Stomach	stomach
22	chr3:133692200-133694200	ZNF genes & repeats	Lung	lung
23	chr3:133692200-133694400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:133692400-133693400	Weak transcription	Fetal Kidney	kidney

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