Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:133592957..133596449-chr3:133596615..133599487,3	MCF-7	breast:
2	chr3:133590405..133593103-chr3:133594407..133597314,2	K562	blood:
3	chr3:133579983..133582900-chr3:133593134..133595437,2	K562	blood:
4	chr3:133593879..133596730-chr3:133611617..133613170,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1122791	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11708165	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11708219	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11719473	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11720811	1.00[CHB][hapmap]
rs13058950	1.00[CHB][hapmap]
rs13074733	1.00[CHB][hapmap]
rs3811662	1.00[JPT][hapmap]
rs4241361	1.00[CHB][hapmap]
rs4241362	1.00[CHB][hapmap]
rs4634113	1.00[CHB][hapmap]
rs62269105	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62269106	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62269107	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62269108	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62269109	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6804798	1.00[CHB][hapmap]
rs7634038	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9828294	1.00[CHB][hapmap]
rs9840711	1.00[CHB][hapmap]
rs9874493	1.00[CHB][hapmap]
rs9881514	1.00[CHB][hapmap]
rs9882333	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133590600-133606600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:133591400-133598200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:133592000-133602000	Weak transcription	Brain Angular Gyrus	brain
4	chr3:133592200-133596200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:133592400-133598400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:133592400-133602800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr3:133592400-133605800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:133594800-133595400	Weak transcription	Brain Germinal Matrix	brain
9	chr3:133594800-133595800	Weak transcription	K562	blood
10	chr3:133595200-133596000	Weak transcription	Brain Anterior Caudate	brain

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