Variant report

Variant	rs62269109
Chromosome Location	chr3:133603906-133603907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133602674..133604300-chr3:133607787..133610295,2	K562	blood:
2	chr3:133583134..133585142-chr3:133602541..133605279,2	MCF-7	breast:
3	chr3:133600203..133603946-chr3:133604240..133607293,3	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11708165	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11708219	0.94[EUR][1000 genomes]
rs11716235	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11719473	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62269105	0.84[EUR][1000 genomes]
rs62269106	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62269107	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62269108	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7634038	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133590600-133606600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:133592400-133605800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:133596400-133613600	Weak transcription	Gastric	stomach
4	chr3:133598800-133610400	Weak transcription	Fetal Brain Male	brain
5	chr3:133599600-133610600	Weak transcription	Pancreas	Pancrea
6	chr3:133599800-133606200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr3:133601000-133608200	Enhancers	Brain Anterior Caudate	brain
8	chr3:133601200-133612800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:133601400-133604400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr3:133601400-133612800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:133601800-133607000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr3:133602400-133606200	Weak transcription	Brain Germinal Matrix	brain
13	chr3:133603000-133604400	Enhancers	Spleen	Spleen
14	chr3:133603000-133605400	Weak transcription	Right Ventricle	heart
15	chr3:133603200-133606200	Weak transcription	Fetal Brain Female	brain
16	chr3:133603200-133606200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr3:133603200-133606400	Weak transcription	Right Atrium	heart
18	chr3:133603200-133610800	Weak transcription	Stomach Smooth Muscle	stomach
19	chr3:133603400-133604000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr3:133603400-133604200	Weak transcription	Brain Angular Gyrus	brain
21	chr3:133603400-133605000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr3:133603600-133604200	Weak transcription	Brain Hippocampus Middle	brain
23	chr3:133603600-133605000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr3:133603600-133606400	Weak transcription	Brain Substantia Nigra	brain
25	chr3:133603600-133606800	Weak transcription	K562	blood
26	chr3:133603800-133606000	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links