Variant report

Variant	rs7634038
Chromosome Location	chr3:133605483-133605484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133600203..133603946-chr3:133604240..133607293,3	MCF-7	breast:
2	chr3:133605158..133607453-chr3:133614736..133616247,2	K562	blood:
3	chr3:133599032..133602224-chr3:133604113..133606875,3	MCF-7	breast:
4	chr3:133604700..133606393-chr3:133610584..133612125,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1122791	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11708165	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11708219	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11716235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11719473	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11720811	1.00[CHB][hapmap]
rs13058950	1.00[CHB][hapmap]
rs13074733	1.00[CHB][hapmap]
rs3811662	1.00[JPT][hapmap]
rs4241361	1.00[CHB][hapmap]
rs4241362	1.00[CHB][hapmap]
rs4634113	1.00[CHB][hapmap]
rs56700947	0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs59396329	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs62269105	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62269106	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62269107	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62269108	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62269109	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6772354	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6804798	1.00[CHB][hapmap]
rs7634310	0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7639796	1.00[CHB][hapmap]
rs9828294	1.00[CHB][hapmap]
rs9840711	1.00[CHB][hapmap]
rs9874493	1.00[CHB][hapmap]
rs9881514	1.00[CHB][hapmap]
rs9882333	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133590600-133606600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:133592400-133605800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:133596400-133613600	Weak transcription	Gastric	stomach
4	chr3:133598800-133610400	Weak transcription	Fetal Brain Male	brain
5	chr3:133599600-133610600	Weak transcription	Pancreas	Pancrea
6	chr3:133599800-133606200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr3:133601000-133608200	Enhancers	Brain Anterior Caudate	brain
8	chr3:133601200-133612800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:133601400-133612800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:133601800-133607000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr3:133602400-133606200	Weak transcription	Brain Germinal Matrix	brain
12	chr3:133603200-133606200	Weak transcription	Fetal Brain Female	brain
13	chr3:133603200-133606200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr3:133603200-133606400	Weak transcription	Right Atrium	heart
15	chr3:133603200-133610800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr3:133603600-133606400	Weak transcription	Brain Substantia Nigra	brain
17	chr3:133603600-133606800	Weak transcription	K562	blood
18	chr3:133603800-133606000	Weak transcription	Left Ventricle	heart
19	chr3:133604200-133605800	Enhancers	Brain Hippocampus Middle	brain
20	chr3:133604200-133608000	Enhancers	Brain Angular Gyrus	brain
21	chr3:133604400-133606000	Weak transcription	Spleen	Spleen
22	chr3:133604400-133608200	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr3:133605000-133605600	Enhancers	Brain Cingulate Gyrus	brain
24	chr3:133605000-133608200	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr3:133605000-133608200	Enhancers	Placenta	Placenta
26	chr3:133605400-133606400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr3:133605400-133606600	Enhancers	Right Ventricle	heart

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