Variant report

Variant	rs9881514
Chromosome Location	chr3:133673711-133673712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133662471..133664232-chr3:133672170..133673874,2	MCF-7	breast:
2	chr3:133672325..133674321-chr3:133674687..133676579,2	MCF-7	breast:
3	chr3:133653327..133655390-chr3:133672919..133674520,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11716235	1.00[CHB][hapmap]
rs11720811	1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13058950	1.00[CHB][hapmap]
rs13074733	1.00[CHB][hapmap]
rs13083496	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28547582	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34087836	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34603519	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34856813	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35473313	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35843040	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35911303	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36011147	1.00[AFR][1000 genomes]
rs4075873	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4241361	1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs4241362	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4634113	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4643708	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56078520	0.84[EUR][1000 genomes]
rs62269155	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6804798	1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs7634038	1.00[CHB][hapmap]
rs7639796	1.00[CHB][hapmap]
rs9828294	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9840711	1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9855403	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9874493	1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882333	1.00[CHB][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133660800-133676400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr3:133663800-133694800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr3:133664000-133676000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:133664000-133705400	Weak transcription	Fetal Intestine Small	intestine
5	chr3:133664800-133713000	Weak transcription	Gastric	stomach
6	chr3:133667600-133676200	Weak transcription	Psoas Muscle	Psoas
7	chr3:133668400-133674800	Weak transcription	Right Ventricle	heart
8	chr3:133668400-133675200	Weak transcription	Right Atrium	heart
9	chr3:133668400-133685600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr3:133668600-133674800	Weak transcription	HUVEC	blood vessel
11	chr3:133668600-133675200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr3:133668800-133674200	Weak transcription	Brain Germinal Matrix	brain
13	chr3:133670200-133680200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:133670600-133687000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr3:133670800-133674000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr3:133671200-133674000	Weak transcription	Fetal Muscle Leg	muscle
17	chr3:133671200-133674800	Weak transcription	Fetal Stomach	stomach
18	chr3:133671400-133674000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr3:133671400-133674600	Weak transcription	Lung	lung
20	chr3:133672400-133676000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr3:133672600-133681400	Weak transcription	Esophagus	oesophagus
22	chr3:133673400-133674000	Enhancers	Placenta Amnion	Placenta Amnion
23	chr3:133673400-133674000	Genic enhancers	Spleen	Spleen
24	chr3:133673400-133674200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:133673600-133676000	Enhancers	Cortex derived primary cultured neurospheres	brain

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