Variant report

Variant	rs56078520
Chromosome Location	chr3:133654488-133654489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133649439..133651993-chr3:133652864..133655302,2	MCF-7	breast:
2	chr3:133653327..133655390-chr3:133672919..133674520,2	MCF-7	breast:
3	chr3:133652370..133655083-chr3:133887182..133889306,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11720811	0.85[EUR][1000 genomes]
rs13083496	0.83[EUR][1000 genomes]
rs28547582	0.83[EUR][1000 genomes]
rs34087836	0.84[EUR][1000 genomes]
rs34603519	0.83[EUR][1000 genomes]
rs34678074	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34856813	0.83[EUR][1000 genomes]
rs35473313	0.89[EUR][1000 genomes]
rs35843040	0.83[EUR][1000 genomes]
rs35911303	0.84[EUR][1000 genomes]
rs4075873	0.89[EUR][1000 genomes]
rs4643708	0.84[EUR][1000 genomes]
rs62269155	0.83[EUR][1000 genomes]
rs6804798	0.82[EUR][1000 genomes]
rs9874493	0.84[EUR][1000 genomes]
rs9881514	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133646800-133658200	Weak transcription	Right Atrium	heart
2	chr3:133647000-133654600	Weak transcription	Right Ventricle	heart
3	chr3:133647000-133661800	Weak transcription	Gastric	stomach
4	chr3:133647400-133661000	Weak transcription	Fetal Thymus	thymus
5	chr3:133647800-133661000	Weak transcription	Lung	lung
6	chr3:133649800-133658200	Weak transcription	Esophagus	oesophagus
7	chr3:133650200-133662600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:133651800-133663400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:133652800-133654600	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr3:133653000-133655400	Genic enhancers	Spleen	Spleen
11	chr3:133653400-133655000	Enhancers	Stomach Mucosa	stomach
12	chr3:133653400-133655600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr3:133654000-133654800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:133654000-133656600	Weak transcription	Fetal Stomach	stomach
15	chr3:133654000-133658200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr3:133654000-133662600	Weak transcription	Fetal Intestine Large	intestine
17	chr3:133654200-133654800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr3:133654200-133655400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:133654200-133655600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr3:133654200-133659200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr3:133654400-133655200	Weak transcription	Duodenum Mucosa	Duodenum
22	chr3:133654400-133661800	Weak transcription	Colonic Mucosa	Colon
23	chr3:133654400-133662200	Weak transcription	Fetal Intestine Small	intestine
24	chr3:133654400-133662600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr3:133654400-133662600	Weak transcription	Small Intestine	intestine

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