Variant report

Variant	rs34678074
Chromosome Location	chr3:133655579-133655580
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133655319..133659400-chr3:133660671..133664345,4	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs56078520	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9855403	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133646800-133658200	Weak transcription	Right Atrium	heart
2	chr3:133647000-133661800	Weak transcription	Gastric	stomach
3	chr3:133647400-133661000	Weak transcription	Fetal Thymus	thymus
4	chr3:133647800-133661000	Weak transcription	Lung	lung
5	chr3:133649800-133658200	Weak transcription	Esophagus	oesophagus
6	chr3:133650200-133662600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:133651800-133663400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:133653400-133655600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr3:133654000-133656600	Weak transcription	Fetal Stomach	stomach
10	chr3:133654000-133658200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr3:133654000-133662600	Weak transcription	Fetal Intestine Large	intestine
12	chr3:133654200-133655600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr3:133654200-133659200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr3:133654400-133661800	Weak transcription	Colonic Mucosa	Colon
15	chr3:133654400-133662200	Weak transcription	Fetal Intestine Small	intestine
16	chr3:133654400-133662600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr3:133654400-133662600	Weak transcription	Small Intestine	intestine
18	chr3:133654600-133662600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr3:133654800-133656200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr3:133654800-133661400	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr3:133655000-133661400	Weak transcription	Stomach Mucosa	stomach
22	chr3:133655400-133655600	Enhancers	Duodenum Mucosa	Duodenum
23	chr3:133655400-133656200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:133655400-133656200	Enhancers	Spleen	Spleen
25	chr3:133655400-133657000	Enhancers	Ovary	ovary
26	chr3:133655400-133658800	Enhancers	Fetal Muscle Leg	muscle
27	chr3:133655400-133660200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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