Variant report

Variant	rs9855403
Chromosome Location	chr3:133685946-133685947
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11720811	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13083496	0.89[EUR][1000 genomes]
rs28547582	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34087836	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34603519	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34678074	0.83[EUR][1000 genomes]
rs34856813	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35473313	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35843040	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35911303	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36011147	1.00[AFR][1000 genomes]
rs4075873	0.87[EUR][1000 genomes]
rs4241361	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs4241362	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs4331673	0.83[CEU][hapmap]
rs4634113	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs4643708	0.90[EUR][1000 genomes]
rs62269155	0.89[EUR][1000 genomes]
rs6804798	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs9828294	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9840711	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9842594	0.88[AMR][1000 genomes]
rs9874493	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs9881514	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9882333	0.92[CEU][hapmap];0.81[EUR][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133663800-133694800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:133664000-133705400	Weak transcription	Fetal Intestine Small	intestine
3	chr3:133664800-133713000	Weak transcription	Gastric	stomach
4	chr3:133670600-133687000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:133675400-133698800	Weak transcription	Right Ventricle	heart
6	chr3:133682800-133699000	Weak transcription	Stomach Mucosa	stomach
7	chr3:133683400-133686200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr3:133683400-133687600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:133683600-133686200	Enhancers	Lung	lung
10	chr3:133683800-133687000	Weak transcription	Adipose Nuclei	Adipose
11	chr3:133684000-133686200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:133684400-133686200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:133684400-133687000	Weak transcription	Left Ventricle	heart
14	chr3:133684600-133687000	Weak transcription	HUVEC	blood vessel
15	chr3:133684600-133687200	Weak transcription	Fetal Lung	lung
16	chr3:133684600-133689400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr3:133685200-133686200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr3:133685600-133686000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr3:133685600-133686200	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr3:133685600-133686200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr3:133685600-133686200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:133685600-133686200	Enhancers	Fetal Thymus	thymus
23	chr3:133685600-133686400	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr3:133685800-133686000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr3:133685800-133686000	Enhancers	Right Atrium	heart
26	chr3:133685800-133686200	Enhancers	H1 Cell Line	embryonic stem cell
27	chr3:133685800-133686200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:133685800-133686200	Enhancers	H9 Cell Line	embryonic stem cell
29	chr3:133685800-133686200	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr3:133685800-133686200	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr3:133685800-133686200	Genic enhancers	Spleen	Spleen
32	chr3:133685800-133687400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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