Variant report

Variant	rs4331673
Chromosome Location	chr3:133709523-133709524
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133705022..133707206-chr3:133707318..133709896,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11719536	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11720843	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36011147	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4241361	0.80[EUR][1000 genomes]
rs4241362	0.80[EUR][1000 genomes]
rs4634113	0.80[EUR][1000 genomes]
rs9828294	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9840711	0.82[TSI][hapmap];0.81[AMR][1000 genomes]
rs9842346	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9842594	0.85[EUR][1000 genomes]
rs9852999	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9855403	0.83[CEU][hapmap]
rs9857498	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9866790	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9874493	0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877509	chr3:133701960-133756102	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133664800-133713000	Weak transcription	Gastric	stomach
2	chr3:133688000-133710800	Weak transcription	Fetal Lung	lung
3	chr3:133705400-133712200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr3:133705800-133710000	Weak transcription	Adipose Nuclei	Adipose
5	chr3:133705800-133710400	Weak transcription	Right Atrium	heart
6	chr3:133706200-133710000	Weak transcription	HSMM	muscle
7	chr3:133707000-133715800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr3:133707800-133709800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr3:133707800-133710000	Weak transcription	Fetal Muscle Leg	muscle
10	chr3:133707800-133710800	Weak transcription	Left Ventricle	heart
11	chr3:133708000-133710400	Weak transcription	Placenta	Placenta
12	chr3:133708000-133710600	Weak transcription	Spleen	Spleen
13	chr3:133708200-133709600	Weak transcription	Fetal Thymus	thymus
14	chr3:133708200-133710000	Weak transcription	Stomach Mucosa	stomach
15	chr3:133708200-133712200	Enhancers	Lung	lung
16	chr3:133708400-133710000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:133708400-133710000	Weak transcription	Small Intestine	intestine
18	chr3:133708400-133710000	Weak transcription	HMEC	breast
19	chr3:133708400-133710200	Weak transcription	Fetal Intestine Large	intestine
20	chr3:133708400-133710200	Weak transcription	Fetal Intestine Small	intestine
21	chr3:133708400-133711200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:133708400-133711400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:133708400-133714000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:133708600-133711000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr3:133708600-133712200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr3:133708800-133710600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr3:133708800-133712200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:133708800-133722800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr3:133709200-133709600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr3:133709200-133712000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr3:133709400-133709600	Enhancers	Fetal Muscle Trunk	muscle
32	chr3:133709400-133709600	Enhancers	Placenta Amnion	Placenta Amnion
33	chr3:133709400-133709800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr3:133709400-133710800	Enhancers	Esophagus	oesophagus
35	chr3:133709400-133710800	Enhancers	Right Ventricle	heart
36	chr3:133709400-133711400	Enhancers	Primary hematopoietic stem cells	blood
37	chr3:133709400-133711800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr3:133709400-133711800	Enhancers	Hela-S3	cervix
39	chr3:133709400-133712400	Enhancers	HUVEC	blood vessel

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