Variant report

Variant	rs9866790
Chromosome Location	chr3:133706861-133706862
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133705824..133707432-chr3:133714907..133717832,2	MCF-7	breast:
2	chr3:133705135..133707184-chr3:133715982..133718526,2	MCF-7	breast:
3	chr3:133696142..133700134-chr3:133702355..133707029,6	MCF-7	breast:
4	chr3:133705022..133707206-chr3:133707318..133709896,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11719536	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11720843	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36011147	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4331673	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9828294	0.80[EUR][1000 genomes]
rs9842346	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9842594	0.83[EUR][1000 genomes]
rs9852999	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9857498	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877509	chr3:133701960-133756102	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133664800-133713000	Weak transcription	Gastric	stomach
2	chr3:133688000-133710800	Weak transcription	Fetal Lung	lung
3	chr3:133696000-133709400	Weak transcription	Esophagus	oesophagus
4	chr3:133699800-133707400	Weak transcription	Spleen	Spleen
5	chr3:133699800-133708200	Weak transcription	Lung	lung
6	chr3:133699800-133709400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:133699800-133709400	Weak transcription	Right Ventricle	heart
8	chr3:133703000-133707000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr3:133703400-133707400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr3:133703400-133708400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:133704600-133707000	Enhancers	Primary hematopoietic stem cells	blood
12	chr3:133704600-133708800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:133705000-133707000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:133705200-133708000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr3:133705200-133708200	Enhancers	Fetal Thymus	thymus
16	chr3:133705400-133707400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr3:133705400-133708400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr3:133705400-133712200	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr3:133705600-133707800	Enhancers	H9 Cell Line	embryonic stem cell
20	chr3:133705800-133707200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr3:133705800-133707600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr3:133705800-133707800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:133705800-133710000	Weak transcription	Adipose Nuclei	Adipose
24	chr3:133705800-133710400	Weak transcription	Right Atrium	heart
25	chr3:133706000-133708400	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr3:133706000-133708400	Enhancers	Fetal Intestine Small	intestine
27	chr3:133706000-133708400	Enhancers	Small Intestine	intestine
28	chr3:133706200-133707200	Weak transcription	Placenta	Placenta
29	chr3:133706200-133708800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
30	chr3:133706200-133710000	Weak transcription	HSMM	muscle
31	chr3:133706400-133707200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
32	chr3:133706400-133707400	Enhancers	H1 Cell Line	embryonic stem cell
33	chr3:133706400-133707400	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr3:133706400-133707800	Enhancers	Fetal Kidney	kidney
35	chr3:133706400-133708400	Enhancers	Fetal Intestine Large	intestine
36	chr3:133706400-133708800	Enhancers	Duodenum Mucosa	Duodenum
37	chr3:133706600-133707000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr3:133706600-133707200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr3:133706600-133708200	Enhancers	Stomach Mucosa	stomach
40	chr3:133706600-133708400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr3:133706600-133708400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr3:133706800-133707200	Weak transcription	Left Ventricle	heart
43	chr3:133706800-133707800	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr3:133706800-133708400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
45	chr3:133706800-133708400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr3:133706800-133709400	Weak transcription	Fetal Muscle Trunk	muscle
47	chr3:133706800-133709400	Weak transcription	HUVEC	blood vessel

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