Variant report

Variant	rs9842594
Chromosome Location	chr3:133706378-133706379
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133705824..133707432-chr3:133714907..133717832,2	MCF-7	breast:
2	chr3:133705135..133707184-chr3:133715982..133718526,2	MCF-7	breast:
3	chr3:133704520..133706796-chr3:133720657..133723153,2	MCF-7	breast:
4	chr3:133696142..133700134-chr3:133702355..133707029,6	MCF-7	breast:
5	chr3:133705022..133707206-chr3:133707318..133709896,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11719536	0.83[EUR][1000 genomes]
rs11720843	0.85[EUR][1000 genomes]
rs36011147	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4331673	0.85[EUR][1000 genomes]
rs9828294	0.85[AMR][1000 genomes]
rs9840711	0.85[AMR][1000 genomes]
rs9842346	0.85[EUR][1000 genomes]
rs9852999	0.84[EUR][1000 genomes]
rs9855403	0.88[AMR][1000 genomes]
rs9857498	0.82[EUR][1000 genomes]
rs9866790	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877509	chr3:133701960-133756102	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133664800-133713000	Weak transcription	Gastric	stomach
2	chr3:133688000-133710800	Weak transcription	Fetal Lung	lung
3	chr3:133696000-133709400	Weak transcription	Esophagus	oesophagus
4	chr3:133699800-133707400	Weak transcription	Spleen	Spleen
5	chr3:133699800-133708200	Weak transcription	Lung	lung
6	chr3:133699800-133709400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:133699800-133709400	Weak transcription	Right Ventricle	heart
8	chr3:133703000-133706400	Weak transcription	Fetal Kidney	kidney
9	chr3:133703000-133707000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:133703400-133707400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr3:133703400-133708400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr3:133704400-133706400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr3:133704600-133707000	Enhancers	Primary hematopoietic stem cells	blood
14	chr3:133704600-133708800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:133705000-133707000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:133705200-133706800	Enhancers	HUVEC	blood vessel
17	chr3:133705200-133708000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr3:133705200-133708200	Enhancers	Fetal Thymus	thymus
19	chr3:133705400-133707400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr3:133705400-133708400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr3:133705400-133712200	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr3:133705600-133706400	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr3:133705600-133706600	Weak transcription	Left Ventricle	heart
24	chr3:133705600-133706800	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr3:133705600-133707800	Enhancers	H9 Cell Line	embryonic stem cell
26	chr3:133705800-133707200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr3:133705800-133707600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr3:133705800-133707800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr3:133705800-133710000	Weak transcription	Adipose Nuclei	Adipose
30	chr3:133705800-133710400	Weak transcription	Right Atrium	heart
31	chr3:133706000-133706600	Weak transcription	Stomach Mucosa	stomach
32	chr3:133706000-133708400	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr3:133706000-133708400	Enhancers	Fetal Intestine Small	intestine
34	chr3:133706000-133708400	Enhancers	Small Intestine	intestine
35	chr3:133706200-133706600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr3:133706200-133706600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr3:133706200-133707200	Weak transcription	Placenta	Placenta
38	chr3:133706200-133708800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
39	chr3:133706200-133710000	Weak transcription	HSMM	muscle

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