Variant report

Variant	rs11720811
Chromosome Location	chr3:133664543-133664544
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133662639..133665040-chr3:133666226..133667747,2	K562	blood:
2	chr3:133662875..133664817-chr3:133717235..133719576,2	K562	blood:
3	chr3:133663716..133666753-chr3:133668228..133671797,3	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11716235	1.00[CHB][hapmap]
rs13058950	1.00[CHB][hapmap]
rs13074733	1.00[CHB][hapmap]
rs13083496	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28547582	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34087836	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34603519	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34856813	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35473313	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35843040	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35911303	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4075873	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4241361	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs4241362	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes]
rs4634113	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs4643708	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56078520	0.85[EUR][1000 genomes]
rs62269155	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6804798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.95[EUR][1000 genomes]
rs7634038	1.00[CHB][hapmap]
rs7639796	1.00[CHB][hapmap]
rs9828294	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9840711	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9855403	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9874493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9881514	1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882333	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133659200-133665400	Enhancers	Fetal Muscle Leg	muscle
2	chr3:133659800-133665400	Enhancers	Fetal Lung	lung
3	chr3:133659800-133665600	Enhancers	Primary hematopoietic stem cells	blood
4	chr3:133659800-133665600	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr3:133660200-133665000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:133660200-133665000	Enhancers	Fetal Muscle Trunk	muscle
7	chr3:133660800-133676400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr3:133661000-133665400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:133661000-133665800	Enhancers	Fetal Thymus	thymus
10	chr3:133661000-133667600	Enhancers	Psoas Muscle	Psoas
11	chr3:133661400-133664600	Enhancers	Duodenum Mucosa	Duodenum
12	chr3:133661400-133665400	Enhancers	Right Atrium	heart
13	chr3:133661400-133666200	Enhancers	Stomach Mucosa	stomach
14	chr3:133661800-133664600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:133661800-133664600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:133661800-133664800	Enhancers	Gastric	stomach
17	chr3:133661800-133665000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:133661800-133667800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr3:133662000-133665000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:133662000-133665600	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr3:133662000-133665800	Enhancers	Osteobl	bone
22	chr3:133662000-133667400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr3:133662000-133667800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:133662200-133664800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:133662200-133665400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr3:133662200-133665800	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr3:133662400-133665600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:133662600-133664600	Enhancers	Esophagus	oesophagus
29	chr3:133662600-133665000	Enhancers	Left Ventricle	heart
30	chr3:133662600-133665400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr3:133662600-133665400	Enhancers	Adipose Nuclei	Adipose
32	chr3:133662600-133665600	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr3:133662600-133665600	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr3:133662600-133668600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr3:133662800-133664600	Enhancers	Colon Smooth Muscle	Colon
36	chr3:133662800-133667200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr3:133662800-133668200	Enhancers	Lung	lung
38	chr3:133663000-133664600	Enhancers	Aorta	Aorta
39	chr3:133663000-133664800	Bivalent Enhancer	Placenta	Placenta
40	chr3:133663200-133664800	Enhancers	Brain Substantia Nigra	brain
41	chr3:133663200-133665000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr3:133663400-133664600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr3:133663400-133665800	Enhancers	Brain Cingulate Gyrus	brain
44	chr3:133663400-133669400	Enhancers	Spleen	Spleen
45	chr3:133663600-133664600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr3:133663600-133664800	Enhancers	Brain Germinal Matrix	brain
47	chr3:133663600-133664800	Enhancers	NH-A	brain
48	chr3:133663600-133665000	Enhancers	Brain Hippocampus Middle	brain
49	chr3:133663600-133665400	Enhancers	HSMM	muscle
50	chr3:133663800-133665200	Enhancers	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links