Variant report

Variant	rs11708165
Chromosome Location	chr3:133612417-133612418
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133593879..133596730-chr3:133611617..133613170,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1122791	0.81[EUR][1000 genomes]
rs11708219	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11716235	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11719473	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56700947	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs59396329	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs62269105	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62269106	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62269107	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62269108	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62269109	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6772354	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7634038	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7634310	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133596400-133613600	Weak transcription	Gastric	stomach
2	chr3:133601200-133612800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:133601400-133612800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:133607000-133612800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:133609800-133613200	Enhancers	Right Ventricle	heart
6	chr3:133609800-133613600	Enhancers	Spleen	Spleen
7	chr3:133610000-133612600	Enhancers	Fetal Brain Female	brain
8	chr3:133610200-133613000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr3:133610200-133613400	Enhancers	K562	blood
10	chr3:133610200-133614000	Enhancers	Fetal Heart	heart
11	chr3:133610400-133612800	Enhancers	Fetal Brain Male	brain
12	chr3:133610600-133612800	Active TSS	Brain Cingulate Gyrus	brain
13	chr3:133610600-133612800	Genic enhancers	Brain Germinal Matrix	brain
14	chr3:133610600-133613200	Enhancers	Left Ventricle	heart
15	chr3:133610800-133612800	Active TSS	Brain Angular Gyrus	brain
16	chr3:133610800-133613400	Enhancers	Right Atrium	heart
17	chr3:133611200-133612600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:133611800-133612800	Weak transcription	Brain Hippocampus Middle	brain
19	chr3:133611800-133613000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:133611800-133613000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr3:133612000-133612600	Enhancers	Ovary	ovary
22	chr3:133612000-133613000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:133612000-133613000	Weak transcription	Pancreas	Pancrea
24	chr3:133612000-133613200	Enhancers	Brain Substantia Nigra	brain
25	chr3:133612200-133612600	Bivalent Enhancer	Fetal Muscle Leg	muscle
26	chr3:133612400-133612600	Weak transcription	Brain Anterior Caudate	brain
27	chr3:133612400-133613200	Active TSS	Brain Inferior Temporal Lobe	brain
28	chr3:133612400-133613400	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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