Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr3:156470453-156470730	HEK293-T-REx	kidney:	n/a	chr3:156470573-156470594

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156392442..156394339-chr3:156468772..156471259,2	MCF-7	breast:

Variant related genes	Relation type
LINC00886	TF binding region
ENSG00000163659	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12492585	0.81[ASN][1000 genomes]
rs12497777	0.97[ASN][1000 genomes]
rs1367311	0.91[AFR][1000 genomes]
rs17380702	0.95[ASN][1000 genomes]
rs17380954	0.95[ASN][1000 genomes]
rs237250	0.87[ASN][1000 genomes]
rs343999	0.87[ASN][1000 genomes]
rs344003	0.87[ASN][1000 genomes]
rs344027	0.91[ASN][1000 genomes]
rs344028	0.87[ASN][1000 genomes]
rs344034	0.87[ASN][1000 genomes]
rs34901284	0.97[ASN][1000 genomes]
rs35161260	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs386736	0.83[ASN][1000 genomes]
rs55802527	0.81[ASN][1000 genomes]
rs62277393	0.91[AFR][1000 genomes]
rs9289971	0.91[AFR][1000 genomes]
rs9822906	0.81[AFR][1000 genomes]
rs9871258	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9873307	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9882795	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13063433	TIPARP-AS1	cis	Artery Tibial	GTEx

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156466800-156471200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr3:156468000-156471000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:156469200-156471000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:156469400-156470800	Enhancers	HSMM	muscle
5	chr3:156469400-156471200	Enhancers	HMEC	breast
6	chr3:156469600-156470800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:156469600-156470800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:156469600-156471400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:156469800-156470800	Weak transcription	Fetal Kidney	kidney
10	chr3:156469800-156471200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:156470000-156471000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr3:156470000-156471000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:156470000-156471200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr3:156470200-156470800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:156470200-156471800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:156470200-156471800	Enhancers	NHDF-Ad	bronchial
17	chr3:156470200-156477800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:156470400-156471200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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