Variant report

Variant	rs9873307
Chromosome Location	chr3:156483129-156483130
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156478908..156481855-chr3:156482060..156485286,3	MCF-7	breast:
2	chr3:156446756..156449290-chr3:156481821..156483387,2	K562	blood:
3	chr3:156481334..156484015-chr3:156486601..156488604,3	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12492585	0.84[ASN][1000 genomes]
rs12497777	1.00[ASN][1000 genomes]
rs13063433	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1367311	0.91[AFR][1000 genomes]
rs17380702	0.98[ASN][1000 genomes]
rs17380954	0.98[ASN][1000 genomes]
rs237250	0.84[ASN][1000 genomes]
rs343999	0.84[ASN][1000 genomes]
rs344003	0.84[ASN][1000 genomes]
rs344027	0.87[ASN][1000 genomes]
rs344028	0.84[ASN][1000 genomes]
rs344034	0.84[ASN][1000 genomes]
rs34901284	1.00[ASN][1000 genomes]
rs35161260	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs386736	0.86[ASN][1000 genomes]
rs55802527	0.84[ASN][1000 genomes]
rs62277393	0.91[AFR][1000 genomes]
rs9289971	0.91[AFR][1000 genomes]
rs9822906	0.81[AFR][1000 genomes]
rs9871258	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9882795	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9873307	TIPARP-AS1	cis	Artery Tibial	GTEx

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156478000-156483400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:156478000-156483800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr3:156478200-156483600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:156479400-156483200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:156481000-156485400	Weak transcription	HSMMtube	muscle
6	chr3:156481000-156490400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:156481000-156490600	Weak transcription	NH-A	brain
8	chr3:156481200-156483600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:156481800-156483600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:156482000-156483400	Enhancers	NHDF-Ad	bronchial
11	chr3:156482200-156483200	Weak transcription	K562	blood
12	chr3:156482200-156487200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:156482400-156483200	Enhancers	NHLF	lung
14	chr3:156482400-156483400	Enhancers	HMEC	breast
15	chr3:156482400-156483400	Enhancers	HUVEC	blood vessel
16	chr3:156482400-156483400	Enhancers	NHEK	skin
17	chr3:156482400-156483400	Enhancers	Osteobl	bone
18	chr3:156482400-156483600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:156482600-156483200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:156482600-156483400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr3:156482800-156483200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:156483000-156483200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr3:156483000-156483200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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