Variant report

Variant	rs9822906
Chromosome Location	chr3:156384295-156384296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156384119..156388903-chr3:156389462..156394403,8	MCF-7	breast:
2	chr3:156271840..156274505-chr3:156381741..156384652,3	K562	blood:

Variant related genes	Relation type
ENSG00000114850	Chromatin interaction
ENSG00000163659	Chromatin interaction
ENSG00000243926	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12493167	0.89[AFR][1000 genomes]
rs12497777	0.89[AFR][1000 genomes]
rs13063433	0.81[AFR][1000 genomes]
rs1367311	0.90[AFR][1000 genomes]
rs17380702	0.89[AFR][1000 genomes]
rs17380954	0.89[AFR][1000 genomes]
rs34901284	0.89[AFR][1000 genomes]
rs35161260	0.90[AFR][1000 genomes]
rs62277393	0.90[AFR][1000 genomes]
rs62277394	0.82[EUR][1000 genomes]
rs9289971	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9871258	0.81[AFR][1000 genomes]
rs9873307	0.81[AFR][1000 genomes]
rs9882795	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9822906	TIPARP-AS1	cis	Artery Tibial	GTEx

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156376600-156385600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr3:156377400-156386000	Weak transcription	Psoas Muscle	Psoas
3	chr3:156381600-156384400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:156382400-156385600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:156382400-156388000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr3:156382600-156384400	Enhancers	Hela-S3	cervix
7	chr3:156382600-156385600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr3:156382600-156386200	Weak transcription	Fetal Kidney	kidney
9	chr3:156382600-156387000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr3:156382600-156387000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr3:156382600-156391600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr3:156382800-156384600	Enhancers	Liver	Liver
13	chr3:156383000-156386000	Weak transcription	Primary T cells from cord blood	blood
14	chr3:156383000-156386000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr3:156383000-156386200	Weak transcription	HSMMtube	muscle
16	chr3:156383000-156386800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr3:156383000-156391400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr3:156383200-156385600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr3:156383200-156385600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr3:156383200-156385600	Weak transcription	Stomach Mucosa	stomach
21	chr3:156383200-156386200	Weak transcription	Fetal Lung	lung
22	chr3:156383200-156388000	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr3:156383400-156385800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr3:156383400-156386000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr3:156383400-156386000	Weak transcription	NHLF	lung
26	chr3:156383600-156384600	Enhancers	GM12878-XiMat	blood
27	chr3:156383600-156384600	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr3:156383600-156386000	Weak transcription	HSMM	muscle
29	chr3:156383600-156386000	Weak transcription	Osteobl	bone
30	chr3:156383600-156387800	Weak transcription	HUVEC	blood vessel
31	chr3:156383600-156390600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr3:156383800-156385000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr3:156383800-156385600	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr3:156383800-156386000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr3:156383800-156386000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr3:156383800-156386000	Weak transcription	K562	blood
37	chr3:156383800-156386000	Weak transcription	NHDF-Ad	bronchial
38	chr3:156384000-156385600	Weak transcription	Primary B cells from peripheral blood	blood
39	chr3:156384000-156385600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr3:156384000-156386000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr3:156384000-156386000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr3:156384200-156385200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr3:156384200-156385600	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr3:156384200-156385600	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr3:156384200-156386000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr3:156384200-156386000	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr3:156384200-156391400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr3:156384200-156391400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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