Variant report

Variant	rs13065451
Chromosome Location	chr3:150422721-150422722
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150320068..150322587-chr3:150419780..150423653,7	MCF-7	breast:
2	chr3:150319300..150322608-chr3:150420316..150423261,6	MCF-7	breast:
3	chr3:150419019..150423394-chr3:150479448..150481415,4	MCF-7	breast:
4	chr3:150421205..150424923-chr3:150480120..150484463,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000244265	Chromatin interaction
ENSG00000181788	Chromatin interaction
ENSG00000198843	Chromatin interaction
ENSG00000120742	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1131685	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11719012	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13063408	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13068979	0.93[EUR][1000 genomes]
rs13074103	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13074670	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13079739	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13079755	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13085974	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13086215	0.93[EUR][1000 genomes]
rs13086267	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13086869	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13090897	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16862794	0.88[ASN][1000 genomes]
rs17281287	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1897494	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2869477	0.88[EUR][1000 genomes]
rs4571271	0.92[EUR][1000 genomes]
rs5007703	0.93[EUR][1000 genomes]
rs57680627	0.96[ASN][1000 genomes]
rs59885616	0.88[ASN][1000 genomes]
rs6807493	0.81[ASN][1000 genomes]
rs73869279	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150422000-150430400	Weak transcription	Spleen	Spleen
2	chr3:150422200-150422800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:150422200-150422800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:150422200-150423600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr3:150422200-150423800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr3:150422200-150428000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr3:150422200-150428200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:150422200-150429800	Weak transcription	Pancreas	Pancrea
9	chr3:150422200-150439400	Weak transcription	Ovary	ovary
10	chr3:150422200-150443200	Weak transcription	Lung	lung
11	chr3:150422400-150422800	Enhancers	Primary hematopoietic stem cells	blood
12	chr3:150422400-150423000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr3:150422400-150423200	Enhancers	Primary T cells fromperipheralblood	blood
14	chr3:150422400-150423200	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr3:150422400-150423200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr3:150422400-150423200	Enhancers	Fetal Muscle Trunk	muscle
17	chr3:150422400-150423400	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr3:150422400-150423400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:150422400-150424400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr3:150422400-150425000	Weak transcription	Fetal Lung	lung
21	chr3:150422400-150425400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr3:150422400-150426200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr3:150422400-150427000	Weak transcription	Fetal Intestine Large	intestine
24	chr3:150422400-150427200	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr3:150422400-150428200	Weak transcription	Brain Anterior Caudate	brain
26	chr3:150422400-150428600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr3:150422400-150429800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr3:150422400-150430000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr3:150422400-150434800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr3:150422400-150443000	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr3:150422600-150422800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr3:150422600-150423000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr3:150422600-150423200	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr3:150422600-150423400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr3:150422600-150423600	Enhancers	Fetal Kidney	kidney
36	chr3:150422600-150423800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr3:150422600-150423800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr3:150422600-150425200	Weak transcription	Primary T cells from cord blood	blood
39	chr3:150422600-150425400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr3:150422600-150425600	Weak transcription	Primary B cells from cord blood	blood
41	chr3:150422600-150425600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr3:150422600-150425600	Weak transcription	A549	lung
43	chr3:150422600-150426000	Weak transcription	Fetal Muscle Leg	muscle
44	chr3:150422600-150426000	Weak transcription	Fetal Thymus	thymus
45	chr3:150422600-150426800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr3:150422600-150427600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr3:150422600-150427600	Weak transcription	Fetal Stomach	stomach
48	chr3:150422600-150427800	Weak transcription	Left Ventricle	heart
49	chr3:150422600-150428000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr3:150422600-150428200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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