The 2.0 version of rSNPBase

Variant report

Variant rs57680627
Chromosome Location chr3:150422824-150422825
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:150422000-150430400 Weak transcription Spleen Spleen
2 chr3:150422200-150423600 Enhancers Primary T helper 17 cells PMA-I stimulated --
3 chr3:150422200-150423800 Enhancers Primary T killer naive cells fromperipheralblood blood
4 chr3:150422200-150428000 Weak transcription Primary T helper naive cells from peripheral blood blood
5 chr3:150422200-150428200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr3:150422200-150429800 Weak transcription Pancreas Pancrea
7 chr3:150422200-150439400 Weak transcription Ovary ovary
8 chr3:150422200-150443200 Weak transcription Lung lung
9 chr3:150422400-150423000 Weak transcription Primary T helper naive cells fromperipheralblood blood
10 chr3:150422400-150423200 Enhancers Primary T cells fromperipheralblood blood
11 chr3:150422400-150423200 Weak transcription Primary T helper cells PMA-I stimulated --
12 chr3:150422400-150423200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
13 chr3:150422400-150423200 Enhancers Fetal Muscle Trunk muscle
14 chr3:150422400-150423400 Enhancers Primary T helper cells fromperipheralblood blood
15 chr3:150422400-150423400 Enhancers Primary Natural Killer cells fromperipheralblood blood
16 chr3:150422400-150424400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
17 chr3:150422400-150425000 Weak transcription Fetal Lung lung
18 chr3:150422400-150425400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
19 chr3:150422400-150426200 Weak transcription Primary T killer memory cells from peripheral blood blood
20 chr3:150422400-150427000 Weak transcription Fetal Intestine Large intestine
21 chr3:150422400-150427200 Weak transcription Rectal Mucosa Donor 29 rectum
22 chr3:150422400-150428200 Weak transcription Brain Anterior Caudate brain
23 chr3:150422400-150428600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
24 chr3:150422400-150429800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
25 chr3:150422400-150430000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
26 chr3:150422400-150434800 Weak transcription Duodenum Smooth Muscle Duodenum
27 chr3:150422400-150443000 Weak transcription Placenta Amnion Placenta Amnion
28 chr3:150422600-150423000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
29 chr3:150422600-150423200 Enhancers Breast Myoepithelial Primary Cells Breast
30 chr3:150422600-150423400 Enhancers Primary T regulatory cells fromperipheralblood blood
31 chr3:150422600-150423600 Enhancers Fetal Kidney kidney
32 chr3:150422600-150423800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr3:150422600-150423800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
34 chr3:150422600-150425200 Weak transcription Primary T cells from cord blood blood
35 chr3:150422600-150425400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
36 chr3:150422600-150425600 Weak transcription Primary B cells from cord blood blood
37 chr3:150422600-150425600 Weak transcription Primary hematopoietic stem cells short term culture blood
38 chr3:150422600-150425600 Weak transcription A549 lung
39 chr3:150422600-150426000 Weak transcription Fetal Muscle Leg muscle
40 chr3:150422600-150426000 Weak transcription Fetal Thymus thymus
41 chr3:150422600-150426800 Weak transcription iPS-20b Cell Line embryonic stem cell
42 chr3:150422600-150427600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr3:150422600-150427600 Weak transcription Fetal Stomach stomach
44 chr3:150422600-150427800 Weak transcription Left Ventricle heart
45 chr3:150422600-150428000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
46 chr3:150422600-150428200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
47 chr3:150422600-150428200 Weak transcription Aorta Aorta
48 chr3:150422600-150428200 Weak transcription Fetal Adrenal Gland Adrenal Gland
49 chr3:150422600-150428200 Weak transcription Osteobl bone
50 chr3:150422600-150428600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015