Variant report

Variant	rs73869279
Chromosome Location	chr3:150446878-150446879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150433681..150449199-chr3:150473254..150487048,35	MCF-7	breast:
2	chr3:150443352..150449244-chr3:150477462..150483925,16	K562	blood:
3	chr3:150443385..150447273-chr3:150447378..150454336,8	K562	blood:
4	chr3:150445895..150450049-chr3:150452463..150456405,5	MCF-7	breast:
5	chr3:150445560..150447651-chr3:150448542..150450591,2	MCF-7	breast:
6	chr3:150441775..150449355-chr3:150477239..150485487,18	K562	blood:
7	chr3:150319356..150322439-chr3:150444279..150447274,5	K562	blood:

Variant related genes	Relation type
ENSG00000198843	Chromatin interaction
ENSG00000120742	Chromatin interaction
ENSG00000181788	Chromatin interaction
ENSG00000244265	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1131685	0.87[ASN][1000 genomes]
rs12634699	0.81[ASN][1000 genomes]
rs12638096	0.81[ASN][1000 genomes]
rs13063408	0.84[ASN][1000 genomes]
rs13065451	0.81[ASN][1000 genomes]
rs13074103	0.87[ASN][1000 genomes]
rs13074670	0.87[ASN][1000 genomes]
rs13079739	0.85[ASN][1000 genomes]
rs13079755	0.87[ASN][1000 genomes]
rs13085974	0.92[ASN][1000 genomes]
rs13086267	0.91[ASN][1000 genomes]
rs13086869	0.86[ASN][1000 genomes]
rs13090897	0.87[ASN][1000 genomes]
rs16862794	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17281287	0.86[ASN][1000 genomes]
rs1897494	0.87[ASN][1000 genomes]
rs56725170	0.80[AMR][1000 genomes]
rs57680627	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59885616	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6807493	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7641475	0.82[ASN][1000 genomes]
rs9869495	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150423200-150451600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:150429200-150457600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:150430000-150455000	Weak transcription	Primary T cells from cord blood	blood
4	chr3:150430800-150454000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:150439800-150457600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr3:150439800-150459000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:150442200-150455200	Weak transcription	Thymus	Thymus
8	chr3:150442400-150448000	Enhancers	HepG2	liver
9	chr3:150443200-150457800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr3:150443600-150451200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:150443800-150454200	Weak transcription	Fetal Intestine Large	intestine
12	chr3:150444000-150457600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr3:150445000-150455000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr3:150445200-150451000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:150445200-150453800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:150445600-150448000	Enhancers	Liver	Liver
17	chr3:150445800-150451200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr3:150445800-150451200	Weak transcription	Gastric	stomach
19	chr3:150446000-150454200	Weak transcription	Adipose Nuclei	Adipose
20	chr3:150446000-150455800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr3:150446000-150458600	Weak transcription	Brain Substantia Nigra	brain
22	chr3:150446200-150451000	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr3:150446200-150451200	Weak transcription	Placenta	Placenta
24	chr3:150446200-150451200	Weak transcription	Right Atrium	heart
25	chr3:150446200-150451600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr3:150446200-150451600	Weak transcription	HMEC	breast
27	chr3:150446200-150455400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:150446200-150458400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr3:150446400-150451000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr3:150446400-150451000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr3:150446600-150448200	Flanking Active TSS	K562	blood
32	chr3:150446600-150451200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr3:150446800-150447000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr3:150446800-150447000	Flanking Active TSS	Fetal Heart	heart
35	chr3:150446800-150451000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr3:150446800-150451000	Weak transcription	NHEK	skin
37	chr3:150446800-150455000	Weak transcription	Fetal Intestine Small	intestine

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