Variant report

Variant	rs7641475
Chromosome Location	chr3:150441924-150441925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:150441916-150442031	MCF-7	breast:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:150248363..150251305-chr3:150440477..150443457,2	K562	blood:
2	chr3:150440644..150442548-chr3:150452902..150455892,2	MCF-7	breast:
3	chr3:150433681..150449199-chr3:150473254..150487048,35	MCF-7	breast:
4	chr3:150441775..150449355-chr3:150477239..150485487,18	K562	blood:
5	chr3:150419945..150423964-chr3:150439302..150443369,4	MCF-7	breast:
6	chr3:150437792..150441033-chr3:150441537..150446048,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000244668	TF binding region
ENSG00000240137	Chromatin interaction
ENSG00000244265	Chromatin interaction
ENSG00000181788	Chromatin interaction
ENSG00000163645	Chromatin interaction
ENSG00000244668	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12494272	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12630292	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12634699	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12638096	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1897489	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1897491	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28460384	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28790675	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4558804	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55838848	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6766333	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6784407	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6807493	0.82[ASN][1000 genomes]
rs73869279	0.82[ASN][1000 genomes]
rs7648424	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7650706	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9682958	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9814796	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9848451	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9858987	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9869495	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9876621	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150422200-150443200	Weak transcription	Lung	lung
2	chr3:150422400-150443000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:150423200-150451600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:150429200-150444600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:150429200-150457600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:150430000-150455000	Weak transcription	Primary T cells from cord blood	blood
7	chr3:150430800-150454000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:150439200-150442200	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr3:150439400-150446800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:150439600-150443000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr3:150439600-150444400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:150439600-150444800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:150439800-150442000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr3:150439800-150442600	Weak transcription	Placenta	Placenta
15	chr3:150439800-150443000	Weak transcription	Colonic Mucosa	Colon
16	chr3:150439800-150443000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr3:150439800-150443000	Weak transcription	Fetal Intestine Large	intestine
18	chr3:150439800-150443000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr3:150439800-150443200	Weak transcription	Fetal Intestine Small	intestine
20	chr3:150439800-150444600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:150439800-150444800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr3:150439800-150444800	Weak transcription	Adipose Nuclei	Adipose
23	chr3:150439800-150444800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr3:150439800-150444800	Weak transcription	Brain Hippocampus Middle	brain
25	chr3:150439800-150445600	Weak transcription	Gastric	stomach
26	chr3:150439800-150457600	Weak transcription	Primary hematopoietic stem cells	blood
27	chr3:150439800-150459000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr3:150440400-150443000	Enhancers	NHEK	skin
29	chr3:150441000-150443000	Weak transcription	Hela-S3	cervix
30	chr3:150441000-150443000	Weak transcription	K562	blood
31	chr3:150441000-150443200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr3:150441000-150445000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr3:150441200-150442200	Enhancers	Fetal Thymus	thymus
34	chr3:150441400-150442800	Enhancers	Stomach Mucosa	stomach
35	chr3:150441400-150446400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr3:150441600-150442200	Enhancers	Thymus	Thymus
37	chr3:150441800-150442000	Enhancers	Brain Germinal Matrix	brain
38	chr3:150441800-150442000	Enhancers	Ovary	ovary
39	chr3:150441800-150442000	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr3:150441800-150442000	Enhancers	HepG2	liver
41	chr3:150441800-150445800	Weak transcription	Right Atrium	heart

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