Variant report
| Variant | rs13065946 |
|---|---|
| Chromosome Location | chr3:86317401-86317402 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11127934 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs1170214 | 0.80[EUR][1000 genomes] |
| rs1170215 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs12487935 | 0.82[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12488883 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs12495441 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs12636329 | 0.92[ASN][1000 genomes] |
| rs1390422 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1512919 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1512934 | 0.92[ASN][1000 genomes] |
| rs1512935 | 0.92[ASN][1000 genomes] |
| rs17026843 | 0.81[CHB][hapmap];0.82[JPT][hapmap] |
| rs2089966 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs2201580 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2669408 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs34090744 | 0.92[ASN][1000 genomes] |
| rs34628622 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4688891 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs56053602 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs58142806 | 0.81[AMR][1000 genomes] |
| rs932058 | 0.92[ASN][1000 genomes] |
| rs979471 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532629 | chr3:85763873-86608579 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv877114 | chr3:86257272-86328961 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv877115 | chr3:86278951-86554319 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
