Variant report

Variant	rs17026843
Chromosome Location	chr3:86282294-86282295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12487935	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12636329	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13065946	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs13099202	0.89[ASN][1000 genomes]
rs1512919	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs1512934	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1512935	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1877512	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs34090744	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35117966	0.90[ASN][1000 genomes]
rs4688891	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs932058	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877113	chr3:86205676-86298087	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv877114	chr3:86257272-86328961	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv965419	chr3:86275989-86284412	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a
5	nsv877115	chr3:86278951-86554319	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86277800-86284200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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