Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr3:86319505-86319777	MCF10A-Er-Src	breast:	n/a	chr3:86319620-86319629

Variant related genes	Relation type
ENSG00000239767	TF binding region

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11127934	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1170215	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12487935	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12488883	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12495441	0.83[EUR][1000 genomes]
rs12636329	0.92[ASN][1000 genomes]
rs13065946	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1390422	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1512934	0.92[ASN][1000 genomes]
rs1512935	0.92[ASN][1000 genomes]
rs17026843	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs2089966	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2201580	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2669408	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34090744	0.92[ASN][1000 genomes]
rs34628622	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4688891	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56053602	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs932058	0.92[ASN][1000 genomes]
rs979471	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877114	chr3:86257272-86328961	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv877115	chr3:86278951-86554319	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86318800-86320800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr3:86319000-86320600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:86319400-86320000	Enhancers	HepG2	liver
4	chr3:86319400-86320400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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