Variant report

Variant	rs13069634
Chromosome Location	chr3:100543944-100543945
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12696195	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs13089098	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs13433770	0.81[EUR][1000 genomes]
rs1992107	0.82[EUR][1000 genomes]
rs59590198	0.88[ASN][1000 genomes]
rs6808242	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73861213	0.88[EUR][1000 genomes]
rs7615467	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7642643	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs7652397	0.82[CHB][hapmap];0.84[JPT][hapmap];0.95[YRI][hapmap];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9823432	0.86[EUR][1000 genomes]
rs9833369	0.84[EUR][1000 genomes]
rs9836360	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs9845149	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9846590	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs9877253	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9877951	0.92[CEU][hapmap]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100505200-100558200	Weak transcription	Ovary	ovary
2	chr3:100505200-100582800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:100506000-100548400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr3:100514200-100547600	Weak transcription	Fetal Muscle Leg	muscle
5	chr3:100516000-100572200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:100517400-100594400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr3:100530000-100594400	Weak transcription	HSMM	muscle
8	chr3:100530400-100547000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:100530800-100555400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:100531600-100555400	Weak transcription	NHDF-Ad	bronchial
11	chr3:100533800-100573000	Weak transcription	Aorta	Aorta
12	chr3:100538000-100547800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr3:100539000-100558200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr3:100541600-100547000	Weak transcription	HSMMtube	muscle
15	chr3:100543000-100544800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:100543000-100545200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr3:100543800-100545600	Weak transcription	Osteobl	bone
18	chr3:100543800-100547800	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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