Variant report

Variant	rs9833369
Chromosome Location	chr3:100552190-100552191
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr3:100551900-100552722	HepG2	liver:	n/a	n/a
2	FOXA2	chr3:100552055-100552194	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ABI3BP	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12696195	0.81[AMR][1000 genomes]
rs13069634	0.84[EUR][1000 genomes]
rs13433770	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1992107	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6808242	0.92[EUR][1000 genomes]
rs73861213	0.80[AMR][1000 genomes]
rs7615467	0.84[EUR][1000 genomes]
rs7652397	0.94[EUR][1000 genomes]
rs9814084	0.87[EUR][1000 genomes]
rs9845149	0.92[EUR][1000 genomes]
rs9846590	0.80[AMR][1000 genomes]
rs9873555	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9877253	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877221	chr3:100546974-100592709	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv514163	chr3:100547342-100670846	Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100505200-100558200	Weak transcription	Ovary	ovary
2	chr3:100505200-100582800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:100516000-100572200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:100517400-100594400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr3:100530000-100594400	Weak transcription	HSMM	muscle
6	chr3:100530800-100555400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:100531600-100555400	Weak transcription	NHDF-Ad	bronchial
8	chr3:100533800-100573000	Weak transcription	Aorta	Aorta
9	chr3:100539000-100558200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:100545600-100554400	Strong transcription	Osteobl	bone
11	chr3:100547000-100553800	Strong transcription	HSMMtube	muscle
12	chr3:100547000-100555600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:100547600-100553800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:100548400-100552400	Strong transcription	Stomach Smooth Muscle	stomach
15	chr3:100548600-100555400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr3:100548600-100558200	Weak transcription	Fetal Stomach	stomach
17	chr3:100549400-100563000	Weak transcription	Fetal Lung	lung
18	chr3:100549800-100562200	Weak transcription	Fetal Intestine Large	intestine
19	chr3:100550200-100555200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:100550600-100558000	Weak transcription	Fetal Muscle Leg	muscle
21	chr3:100551800-100553200	Enhancers	HepG2	liver
22	chr3:100551800-100553400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr3:100552000-100552800	Enhancers	Brain Substantia Nigra	brain
24	chr3:100552000-100553400	Enhancers	Brain Hippocampus Middle	brain
25	chr3:100552000-100553600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links