Variant report

Variant	rs7615467
Chromosome Location	chr3:100539887-100539888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:100537380..100539957-chr3:100544085..100546167,2	K562	blood:
2	chr3:100533070..100534952-chr3:100539275..100541855,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12696195	1.00[CEU][hapmap];0.89[TSI][hapmap];0.94[EUR][1000 genomes]
rs13069634	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13089098	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs13433770	0.83[EUR][1000 genomes]
rs1979895	0.92[CEU][hapmap]
rs1992107	0.82[EUR][1000 genomes]
rs59590198	0.87[ASN][1000 genomes]
rs6808242	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.89[MEX][hapmap];0.87[MKK][hapmap];0.94[TSI][hapmap];0.95[YRI][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73861213	0.90[EUR][1000 genomes]
rs7642643	1.00[CEU][hapmap];0.86[GIH][hapmap];0.83[TSI][hapmap];0.88[EUR][1000 genomes]
rs7652397	0.81[CHB][hapmap];0.84[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9814084	0.86[GIH][hapmap];0.83[TSI][hapmap]
rs9823432	0.88[EUR][1000 genomes]
rs9833369	0.84[EUR][1000 genomes]
rs9836360	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9845149	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9846590	1.00[CEU][hapmap];0.86[GIH][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]
rs9873555	0.86[GIH][hapmap];0.82[TSI][hapmap]
rs9877253	0.91[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9877951	1.00[CEU][hapmap];0.86[GIH][hapmap];0.83[TSI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7615467	FAM55C	cis	parietal	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100505200-100558200	Weak transcription	Ovary	ovary
2	chr3:100505200-100582800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:100506000-100548400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr3:100514200-100547600	Weak transcription	Fetal Muscle Leg	muscle
5	chr3:100516000-100572200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:100517400-100594400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr3:100518800-100543000	Weak transcription	Fetal Stomach	stomach
8	chr3:100530000-100594400	Weak transcription	HSMM	muscle
9	chr3:100530400-100547000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:100530800-100555400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:100531600-100555400	Weak transcription	NHDF-Ad	bronchial
12	chr3:100533800-100573000	Weak transcription	Aorta	Aorta
13	chr3:100535600-100540800	Weak transcription	HSMMtube	muscle
14	chr3:100536000-100543000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:100536800-100543800	Strong transcription	Osteobl	bone
16	chr3:100538000-100547800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr3:100539000-100558200	Weak transcription	Rectal Smooth Muscle	rectum

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