Variant report

Variant	rs13070126
Chromosome Location	chr3:54737606-54737607
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:54736841..54738842-chr3:54744528..54747366,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12488046	0.94[CEU][hapmap];0.86[ASN][1000 genomes]
rs12490327	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13060843	0.81[ASN][1000 genomes]
rs13068008	0.82[CEU][hapmap]
rs13081682	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13083683	0.84[CEU][hapmap]
rs13084602	0.94[CEU][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13086256	0.83[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13088416	0.94[CEU][hapmap]
rs13095178	0.93[ASN][1000 genomes]
rs13096365	0.87[ASN][1000 genomes]
rs13100029	0.89[CEU][hapmap];0.81[ASN][1000 genomes]
rs1344671	0.89[CEU][hapmap]
rs1520575	0.87[ASN][1000 genomes]
rs17815840	0.87[ASN][1000 genomes]
rs1829549	0.85[ASN][1000 genomes]
rs1882322	0.89[CEU][hapmap]
rs1921548	0.83[CEU][hapmap]
rs36061401	0.88[ASN][1000 genomes]
rs3852006	0.94[CEU][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3864001	0.94[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3868872	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3906509	0.88[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4083342	0.94[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6798481	0.85[ASN][1000 genomes]
rs6808464	0.83[CEU][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72870697	0.81[ASN][1000 genomes]
rs7618235	0.90[CEU][hapmap]
rs7623961	0.94[CEU][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428084	chr3:54404258-54742756	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv834700	chr3:54637374-54803896	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54713600-54743400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:54732400-54737800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:54732400-54737800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:54732400-54737800	Weak transcription	Brain Germinal Matrix	brain
5	chr3:54733600-54737800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:54734000-54738000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:54737000-54740600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr3:54737200-54740200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:54737400-54739600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr3:54737400-54739800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr3:54737600-54738000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr3:54737600-54738000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:54737600-54738200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr3:54737600-54738600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr3:54737600-54739000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr3:54737600-54739400	Enhancers	Brain Anterior Caudate	brain
17	chr3:54737600-54739600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:54737600-54739600	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr3:54737600-54742200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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