Variant report
| Variant | rs13071041 |
|---|---|
| Chromosome Location | chr3:161567919-161567920 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10936254 | 0.89[ASN][1000 genomes] |
| rs11915112 | 0.89[ASN][1000 genomes] |
| rs12631106 | 0.88[ASN][1000 genomes] |
| rs1388714 | 0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1492160 | 0.89[ASN][1000 genomes] |
| rs1550157 | 0.89[ASN][1000 genomes] |
| rs1586846 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1586847 | 0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1586848 | 0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1844954 | 0.89[ASN][1000 genomes] |
| rs1972827 | 0.89[ASN][1000 genomes] |
| rs1972828 | 0.89[ASN][1000 genomes] |
| rs1976207 | 0.89[ASN][1000 genomes] |
| rs34595574 | 0.89[ASN][1000 genomes] |
| rs35286282 | 0.88[ASN][1000 genomes] |
| rs35462724 | 0.89[ASN][1000 genomes] |
| rs36070938 | 0.89[ASN][1000 genomes] |
| rs4472059 | 0.89[ASN][1000 genomes] |
| rs6767545 | 0.89[ASN][1000 genomes] |
| rs6767735 | 0.89[ASN][1000 genomes] |
| rs73170163 | 0.91[AMR][1000 genomes] |
| rs9879766 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533237 | chr3:161019834-161804660 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 91 gene(s) | inside rSNPs | diseases |
| 2 | esv2757901 | chr3:161449993-161593770 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv2759195 | chr3:161449993-161593770 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv3395930 | chr3:161552299-161584754 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:161566600-161572400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
